Detailed information    

insolico Bioinformatically predicted

Overview

Name   recC   Type   Machinery gene
Locus tag   CYJ98_RS07005 Genome accession   NZ_CP136962
Coordinates   1511246..1514545 (-) Length   1099 a.a.
NCBI ID   WP_101755252.1    Uniprot ID   A0A9X7F8H8
Organism   Neisseria perflava strain UMB0023     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1506246..1519545
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CYJ98_RS06985 (CYJ98_006985) ilvE 1507890..1508888 (-) 999 WP_101755255.1 branched-chain-amino-acid transaminase -
  CYJ98_RS06990 (CYJ98_006990) - 1509101..1509424 (+) 324 WP_101755254.1 LapA family protein -
  CYJ98_RS06995 (CYJ98_006995) lapB 1509450..1510619 (+) 1170 WP_003684462.1 lipopolysaccharide assembly protein LapB -
  CYJ98_RS07000 (CYJ98_007000) - 1510736..1511242 (-) 507 WP_101755253.1 thioredoxin family protein -
  CYJ98_RS07005 (CYJ98_007005) recC 1511246..1514545 (-) 3300 WP_101755252.1 exodeoxyribonuclease V subunit gamma Machinery gene
  CYJ98_RS07015 (CYJ98_007015) - 1514870..1515748 (-) 879 WP_070625949.1 lysophospholipid acyltransferase family protein -
  CYJ98_RS07020 (CYJ98_007020) metK 1516141..1517310 (+) 1170 WP_049351011.1 methionine adenosyltransferase -
  CYJ98_RS07025 (CYJ98_007025) - 1517420..1517740 (+) 321 WP_101755251.1 accessory factor UbiK family protein -
  CYJ98_RS07030 (CYJ98_007030) comM 1517754..1519250 (+) 1497 WP_101755250.1 YifB family Mg chelatase-like AAA ATPase Machinery gene

Sequence

Protein


Download         Length: 1099 a.a.        Molecular weight: 125036.64 Da        Isoelectric Point: 4.6373

>NTDB_id=893789 CYJ98_RS07005 WP_101755252.1 1511246..1514545(-) (recC) [Neisseria perflava strain UMB0023]
MFYLYQSDRLEALAEMCAHIHQALPLDSVLAQEEVLVQSQGMRRYLNVFFARKLGVAANLKFSLPAGLAWQLMRKLVPDV
PPLSPFSPEVMRWRLLDLFRSEAFQTAPEYENVRLKLESYLHSSASADYQLAGQMADIFDQYLVYRPDWIDAWQAGKLLG
LGDDEDWQARLWRYLDDGSQSAPHRVALWEKLLAQLDKSVLPQRFFVFGISTMAPMYLQLLHQISKHCDVFVFALNPSSQ
YWGEVIDEAQILKRGDEADLSQAGHPLLASLGKQGRDFFDFLSEVETEQDIQVYEEGKDDTLLHCLQNDIQNLIMPSERL
YQQEEGEAGAQSVLVQVHDADGNPVCVEPDKLLNDGSVKIVVAHSPLRELQILKEELSLVLQNNPDWQPHDIAVLTPNIE
PYSPFIEAVFGQEHAGSQALPYSISDVKLSRRQPLLYALAQTLDLLESRFEVDKVLPLLESRLVLQRFGLSEEDVPLLHE
TVAGLNVHWGLDQTMREGKDNLFTWQQAVERLALGWMLPEGGNGMWQGVSAWHSNVNQLDVFSGFAEFICTLADMAAQWQ
EPANVESWVQRCRDLLEKLFAPDTDDQYAKQQFEQSLAKWQEEAQLAEFDGLLPCKTVIRHIRRFLDSESQAGFLSGGIT
FCSMVPMRSLPFKMVCLLGLNDGDFPRNTKAAVFDLIAKHPKKGDRARRDDDRYLFLEALISAREMLYLSYIGRDIRNDA
EFAPSSLISELLDTIAAMTGKSGRELSEKWVKHHPLQAFSRRYFQKDALSDGLFSTRQDYADALNQPQAEAQPFFREALS
QEEPGKTIHQGELVSFWRNPVKVWLKKNLSWDQPYLDGAWESAEPFEPQHEGRIADAYLDARSKGEDFEDTAIRLNAESL
MPVGELGGLWQKQYQISAKNVDTELIRSNKRPSEPYEAYFDDLVLQGTIGNLYECGRIVFLNQKDNAPNRIARLLEHLIF
CAIAPKSVENRQTYMVSLGQTETYAAIEQQTAKELLKEWLVYFRIGQNTPLPFFAKTSLAAAEEYSKKEDWDAALRKAHE
VFNGNKMSKGQKEYTEVKLVFGHSDESPLDEPLFENLVVNLLVPLLTGVAGKTDTTEQE

Nucleotide


Download         Length: 3300 bp        

>NTDB_id=893789 CYJ98_RS07005 WP_101755252.1 1511246..1514545(-) (recC) [Neisseria perflava strain UMB0023]
ATGTTTTATCTTTATCAGTCCGACCGTTTGGAAGCGCTTGCCGAAATGTGCGCGCATATTCATCAGGCCTTGCCCTTGGA
TTCTGTATTGGCGCAGGAAGAAGTGTTGGTGCAGAGCCAGGGGATGCGGCGTTATCTGAATGTGTTTTTTGCGCGCAAAC
TCGGCGTGGCGGCGAATTTGAAGTTCAGCCTGCCTGCCGGTTTGGCGTGGCAGCTGATGCGTAAATTGGTTCCCGATGTG
CCGCCGCTCAGCCCGTTTTCGCCTGAGGTCATGCGTTGGCGTTTGCTGGATTTGTTCCGCAGCGAGGCGTTTCAGACGGC
CCCGGAATACGAAAACGTGCGCTTGAAGCTGGAAAGTTATTTGCATAGTTCGGCATCGGCGGATTATCAGCTTGCCGGAC
AGATGGCGGATATTTTCGACCAATATTTGGTGTACCGCCCGGATTGGATTGATGCGTGGCAGGCTGGGAAGCTGCTGGGT
TTGGGCGATGATGAGGATTGGCAGGCGCGGCTGTGGCGTTATTTGGACGATGGCAGCCAATCTGCGCCGCACCGCGTGGC
CTTGTGGGAAAAGCTGTTGGCGCAGTTGGATAAATCGGTCTTGCCGCAAAGGTTTTTTGTATTCGGCATTTCGACAATGG
CGCCGATGTATTTACAACTGCTGCACCAAATTTCCAAGCATTGCGATGTGTTTGTGTTTGCACTCAATCCGAGCAGCCAA
TATTGGGGCGAGGTTATCGACGAGGCGCAGATTTTGAAAAGGGGTGATGAGGCGGACTTGTCGCAGGCAGGGCATCCGCT
GTTGGCTTCTTTGGGCAAGCAGGGACGCGATTTCTTTGATTTTCTGTCGGAAGTGGAAACCGAGCAGGATATTCAGGTTT
ATGAAGAGGGAAAAGACGATACCTTGTTGCATTGCCTGCAAAACGATATCCAAAACTTAATCATGCCGTCTGAACGCTTA
TATCAACAGGAAGAAGGCGAAGCAGGCGCGCAGTCGGTTTTGGTTCAAGTCCACGATGCGGACGGCAATCCAGTGTGTGT
CGAGCCGGACAAGCTGCTGAATGACGGCTCCGTTAAAATCGTCGTGGCGCACAGCCCTTTGCGCGAATTGCAGATTTTGA
AAGAAGAGTTGTCGCTGGTGTTGCAAAACAATCCCGACTGGCAACCGCACGATATTGCCGTTTTGACGCCAAACATCGAG
CCGTACAGCCCGTTTATCGAAGCCGTTTTTGGGCAGGAGCATGCAGGTAGCCAGGCTTTGCCGTATTCGATTTCGGATGT
GAAACTCAGCCGCCGTCAGCCGTTGCTGTATGCTTTGGCGCAAACTTTGGACTTGCTGGAAAGCCGGTTTGAAGTGGACA
AGGTTTTGCCTTTGCTGGAAAGCCGGTTGGTGTTGCAACGCTTCGGTTTGAGCGAGGAAGATGTGCCGCTGCTGCATGAG
ACTGTTGCCGGATTGAATGTGCATTGGGGTTTGGACCAAACCATGCGCGAGGGCAAAGACAACCTCTTTACTTGGCAGCA
GGCGGTAGAGCGTTTGGCCTTGGGCTGGATGCTGCCTGAAGGCGGCAACGGTATGTGGCAGGGTGTGAGCGCGTGGCATA
GTAATGTCAACCAGTTGGACGTGTTCAGCGGTTTTGCCGAATTTATCTGTACTTTGGCTGATATGGCGGCGCAATGGCAA
GAGCCTGCCAATGTGGAAAGCTGGGTGCAGCGTTGCCGCGATTTGCTGGAGAAACTGTTTGCTCCGGATACGGACGACCA
ATACGCCAAGCAGCAGTTTGAGCAGTCTTTGGCGAAATGGCAGGAAGAGGCGCAGTTGGCCGAATTTGACGGATTGTTGC
CGTGTAAAACCGTTATCCGCCATATCCGCCGCTTTTTGGACAGCGAAAGCCAAGCCGGATTTTTAAGCGGCGGCATCACT
TTTTGCAGTATGGTGCCGATGCGCAGCCTGCCGTTTAAAATGGTTTGCCTACTGGGTTTGAATGACGGCGATTTCCCGCG
CAATACCAAAGCAGCGGTGTTTGACCTGATTGCCAAACATCCGAAAAAAGGCGACCGCGCCCGCCGCGATGACGACCGTT
ACCTCTTCCTCGAAGCTTTAATCAGCGCGCGCGAAATGCTGTATTTGTCTTATATCGGCCGCGATATACGCAATGATGCC
GAGTTCGCGCCGTCTTCGTTAATCAGTGAGCTGCTGGATACCATTGCCGCCATGACGGGGAAAAGCGGGCGTGAGTTGTC
GGAGAAATGGGTGAAACATCATCCTTTGCAGGCTTTTTCGCGCCGTTATTTCCAAAAGGACGCGCTTTCAGACGGCCTCT
TCAGTACGCGCCAAGATTATGCCGATGCGTTGAACCAACCGCAAGCGGAAGCGCAGCCGTTTTTCCGTGAGGCATTAAGT
CAGGAAGAACCGGGCAAAACCATTCATCAGGGCGAGCTCGTCAGTTTTTGGCGTAACCCTGTCAAAGTTTGGCTGAAGAA
AAATTTAAGCTGGGATCAGCCGTATCTGGACGGCGCATGGGAATCTGCCGAACCGTTTGAGCCGCAACATGAAGGTCGGA
TTGCCGATGCCTATTTGGATGCGCGGAGCAAAGGTGAAGATTTTGAAGATACGGCCATTCGGCTGAATGCAGAAAGTCTG
ATGCCGGTAGGCGAATTGGGCGGTTTGTGGCAGAAGCAGTATCAGATATCTGCGAAAAACGTGGATACCGAGTTGATACG
CAGTAACAAAAGGCCGTCTGAACCTTATGAGGCATATTTTGACGACTTGGTTTTACAAGGCACCATCGGCAATCTTTACG
AATGTGGCCGCATTGTGTTCCTAAATCAAAAAGACAATGCCCCCAACCGCATTGCCCGTTTATTGGAGCATTTGATTTTT
TGCGCCATTGCCCCTAAATCCGTTGAAAACCGACAAACCTATATGGTCAGCTTGGGGCAGACCGAAACCTATGCCGCCAT
CGAGCAACAAACAGCAAAAGAACTTTTGAAAGAATGGCTGGTATATTTCCGAATCGGACAAAATACCCCCTTGCCGTTTT
TTGCCAAAACCAGCCTTGCCGCTGCGGAGGAGTACAGCAAAAAAGAAGATTGGGATGCCGCCTTGAGAAAAGCCCATGAG
GTTTTTAATGGCAATAAAATGAGCAAAGGGCAGAAAGAATATACCGAAGTGAAGCTGGTGTTTGGCCATTCGGACGAGTC
GCCTCTTGATGAGCCGCTATTTGAAAACCTCGTCGTCAATCTGCTTGTGCCGCTTTTGACCGGCGTGGCAGGGAAAACCG
ATACAACAGAACAGGAGTAA

Domains

Predicted by InterproScan.

Exodeoxyribonuclease V, gamma subunit (Exonuc_V_gamma)

(2-312)

RecC C-terminal domain (RecC_C)

(807-1024)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recC Neisseria gonorrhoeae strain FA1090

64.842

98.089

0.636