Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD   Type   Machinery gene
Locus tag   CYJ98_RS04320 Genome accession   NZ_CP136962
Coordinates   966055..967818 (-) Length   587 a.a.
NCBI ID   WP_101755490.1    Uniprot ID   -
Organism   Neisseria perflava strain UMB0023     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 961055..972818
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CYJ98_RS04300 (CYJ98_004300) tilS 961673..962872 (-) 1200 WP_244169018.1 tRNA lysidine(34) synthetase TilS -
  CYJ98_RS04305 (CYJ98_004305) - 963099..964058 (-) 960 WP_049333774.1 acetyl-CoA carboxylase carboxyltransferase subunit alpha -
  CYJ98_RS04310 (CYJ98_004310) - 964263..964664 (+) 402 WP_003679090.1 RNA-binding S4 domain-containing protein -
  CYJ98_RS04315 (CYJ98_004315) - 964759..965958 (-) 1200 WP_101755489.1 hypothetical protein -
  CYJ98_RS04320 (CYJ98_004320) recD 966055..967818 (-) 1764 WP_101755490.1 exodeoxyribonuclease V subunit alpha Machinery gene
  CYJ98_RS04325 (CYJ98_004325) lolD 967950..968633 (-) 684 WP_101755491.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  CYJ98_RS04330 (CYJ98_004330) - 968626..969876 (-) 1251 WP_003746931.1 lipoprotein-releasing ABC transporter permease subunit -
  CYJ98_RS04335 (CYJ98_004335) - 970091..970378 (+) 288 WP_003683377.1 hypothetical protein -
  CYJ98_RS04340 (CYJ98_004340) recR 970441..971046 (-) 606 WP_101755492.1 recombination mediator RecR -

Sequence

Protein


Download         Length: 587 a.a.        Molecular weight: 64779.93 Da        Isoelectric Point: 5.5296

>NTDB_id=893777 CYJ98_RS04320 WP_101755490.1 966055..967818(-) (recD) [Neisseria perflava strain UMB0023]
MNPTDSILSSAADAAIAFFRRHEVQGASVIEPYVVRLFAALQNGHSFIYLDKADVDALSNLPNLVGNEDKPLILQGRKLF
LGRMWQLEHDLAVEIKRLASAEAEEVNFMAASKSLSDWFDTKDSKEQRGAAALALLQNFMLITGGPGTGKTTTVAKLLGL
ICNNSTKLPRIALAAPTGKAAAHMVRALQRALDGFDLSPSVKAHLENLEGQTVHRLLKLRPPQMRPAFNHEYPLALDVLV
VDEASMLDLPLVLDLLRAVPTGCRLVLLGDENQLPSVGLGAVLAALSRPTALDKETAEKLEVYLPNHGFEIKGQPQALSQ
NNAKLTFSHRFGADSGIGCLARAVVSGEKQTAVEQFDKFPKELEMKTGRLKEQVALLYQKQQDYWQAVAENNVALAYGHA
ADVVVLAAWRQDADDLNQAYQEYLQRQGKVSGETPWFAGQIIMITHNDYMLEVFNGDIGLIMKDEESLNGLSAYFPEKDG
FKKIAISRLPDFESAFAMTVHKSQGSEYREVWLLPPSVPATTESEEEARGLDKALLYTAITRARERFVFWGNAEELCQAV
GCHQKRRTALADALKWQFEQPDEQASV

Nucleotide


Download         Length: 1764 bp        

>NTDB_id=893777 CYJ98_RS04320 WP_101755490.1 966055..967818(-) (recD) [Neisseria perflava strain UMB0023]
ATGAATCCAACCGACTCTATCCTTTCCTCTGCCGCAGATGCGGCCATAGCGTTTTTCCGCCGCCACGAAGTACAGGGAGC
ATCCGTTATTGAGCCTTATGTGGTTCGACTGTTTGCAGCCTTGCAAAACGGGCATTCGTTTATTTACTTGGATAAAGCGG
ATGTTGATGCCTTAAGCAACTTGCCGAATTTGGTCGGCAATGAGGATAAACCGCTTATCCTGCAAGGCCGGAAATTGTTT
TTAGGGCGGATGTGGCAGTTGGAGCATGATTTGGCTGTTGAAATCAAACGGCTGGCAAGTGCCGAGGCGGAAGAAGTGAA
TTTCATGGCGGCTTCAAAAAGCCTGAGCGACTGGTTTGATACTAAAGACAGCAAAGAGCAAAGGGGTGCTGCGGCTTTGG
CCTTGCTGCAAAACTTTATGCTGATTACCGGCGGGCCGGGTACGGGGAAGACGACGACCGTAGCAAAGCTTTTGGGTCTG
ATTTGCAATAACAGTACGAAGCTGCCCCGTATTGCGTTGGCTGCGCCGACGGGCAAAGCGGCTGCGCATATGGTACGGGC
TTTGCAGCGTGCTTTGGACGGTTTTGATTTGTCTCCGAGCGTCAAAGCGCATTTGGAAAACTTGGAAGGGCAGACTGTTC
ATCGTTTGTTGAAACTGCGTCCGCCGCAAATGCGCCCTGCGTTCAATCATGAATATCCGCTTGCATTGGATGTTTTGGTG
GTGGATGAGGCCTCAATGTTGGATTTGCCGCTGGTGTTGGATTTGTTGCGCGCCGTGCCGACCGGCTGTCGTCTGGTGTT
GCTTGGCGATGAAAACCAGTTACCGTCGGTTGGCTTGGGTGCCGTATTGGCGGCATTGTCGCGTCCGACGGCTTTGGATA
AAGAAACCGCTGAAAAGCTGGAAGTGTACCTGCCCAATCATGGCTTTGAAATTAAAGGGCAGCCACAGGCTTTATCGCAA
AACAATGCCAAATTGACATTCAGCCACCGTTTCGGTGCAGACAGCGGTATTGGTTGTTTGGCAAGGGCGGTGGTGTCCGG
GGAAAAGCAAACTGCGGTCGAACAGTTTGACAAGTTCCCCAAAGAATTGGAAATGAAAACAGGCCGTCTGAAAGAGCAGG
TCGCTTTGCTGTATCAAAAGCAACAGGATTATTGGCAGGCCGTGGCAGAGAATAATGTTGCACTCGCTTATGGTCATGCG
GCCGATGTGGTGGTATTGGCAGCTTGGCGGCAGGATGCGGATGATTTGAATCAGGCTTATCAAGAATACTTGCAACGACA
AGGCAAGGTTTCGGGCGAAACGCCTTGGTTTGCCGGACAAATCATCATGATTACGCACAATGATTACATGCTGGAAGTGT
TTAACGGCGACATCGGGCTGATTATGAAAGATGAAGAATCGTTGAATGGCTTGTCTGCCTATTTTCCTGAGAAAGATGGA
TTCAAAAAAATTGCCATCAGCCGTTTGCCTGATTTTGAATCGGCTTTTGCCATGACGGTGCATAAGAGCCAAGGTTCGGA
ATATCGGGAAGTATGGCTGTTGCCCCCGTCAGTGCCTGCAACGACGGAAAGTGAAGAGGAAGCCCGAGGTTTGGATAAGG
CTTTGCTTTACACGGCCATTACCCGTGCGCGTGAACGTTTTGTGTTTTGGGGAAATGCGGAGGAATTGTGTCAGGCTGTG
GGATGCCATCAAAAACGCAGGACAGCATTGGCCGATGCCTTGAAATGGCAGTTTGAACAGCCTGATGAGCAGGCTTCTGT
TTGA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(495-546)

AAA domain (AAA_19)

(127-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD Neisseria gonorrhoeae strain FA1090

58.579

98.296

0.576