Detailed information    

insolico Bioinformatically predicted

Overview

Name   tpc   Type   Machinery gene
Locus tag   CYJ98_RS02170 Genome accession   NZ_CP136962
Coordinates   481675..482823 (+) Length   382 a.a.
NCBI ID   WP_101755101.1    Uniprot ID   -
Organism   Neisseria perflava strain UMB0023     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context

Location: 476675..487823
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CYJ98_RS02135 (CYJ98_002135) - 476933..477532 (+) 600 WP_101755095.1 Maf family protein -
  CYJ98_RS02140 (CYJ98_002140) rsmA 477621..478400 (+) 780 WP_101755096.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA -
  CYJ98_RS02145 (CYJ98_002145) - 478408..478731 (+) 324 WP_101755097.1 hypothetical protein -
  CYJ98_RS02150 (CYJ98_002150) - 478731..479459 (+) 729 WP_101755098.1 amino acid ABC transporter ATP-binding protein -
  CYJ98_RS02155 (CYJ98_002155) - 479523..479882 (+) 360 WP_003747228.1 hypothetical protein -
  CYJ98_RS02160 (CYJ98_002160) - 479887..480339 (+) 453 WP_101755099.1 protein YgfX -
  CYJ98_RS02165 (CYJ98_002165) folC 480378..481661 (+) 1284 WP_101755100.1 bifunctional tetrahydrofolate synthase/dihydrofolate synthase -
  CYJ98_RS02170 (CYJ98_002170) tpc 481675..482823 (+) 1149 WP_101755101.1 cell division protein FtsN Machinery gene
  CYJ98_RS02175 (CYJ98_002175) - 482816..483349 (+) 534 WP_101755102.1 CvpA family protein -
  CYJ98_RS02180 (CYJ98_002180) purF 483502..485049 (+) 1548 WP_101755103.1 amidophosphoribosyltransferase -
  CYJ98_RS02185 (CYJ98_002185) greB 485124..485615 (+) 492 WP_101755104.1 transcription elongation factor GreB -
  CYJ98_RS02190 (CYJ98_002190) - 485704..486411 (-) 708 WP_101755105.1 SIMPL domain-containing protein -
  CYJ98_RS02195 (CYJ98_002195) - 486524..487015 (-) 492 WP_101755106.1 DUF1841 family protein -
  CYJ98_RS02200 (CYJ98_002200) ftsB 487117..487392 (-) 276 WP_003679613.1 cell division protein FtsB -

Sequence

Protein


Download         Length: 382 a.a.        Molecular weight: 41789.74 Da        Isoelectric Point: 9.8498

>NTDB_id=893773 CYJ98_RS02170 WP_101755101.1 481675..482823(+) (tpc) [Neisseria perflava strain UMB0023]
MSDNKQKETPNGYDLDGYEQLKRRNRRRLVLASGLVVASGMLFGLALTSGDDKNSPFKEAPVGQSQVKTADEPSNAVVLE
PNKEDVAMAEEAARHADAEAQSKPQNAGDEEDNAPVEVLKPNRESAPEDVGEPLVLINDTLDDGNIKGLEESERIQRAEA
AKREAAERRAEERRQRQAEQRAAAARKTQAQQEAAEKENALAAKKRALQARAEKAEREAAAERNKLAQLEKAEKAIAERK
SAKNSKDSVKDKAEPAKKAEAKVEKPKNEKAKPETAKAEKADKVKTAEKPSEKAKPKAEKETAEAKPAKKAAIQAGYAEK
ERAQSLQRKMKAAGIDSTITEVMTDKGKVYRVKSASYKNARDAERDLNKLRVHGIAGQVTSE

Nucleotide


Download         Length: 1149 bp        

>NTDB_id=893773 CYJ98_RS02170 WP_101755101.1 481675..482823(+) (tpc) [Neisseria perflava strain UMB0023]
ATGTCCGACAATAAACAAAAAGAAACTCCAAACGGATACGATTTAGACGGTTACGAACAACTCAAACGTCGCAACCGCCG
TCGCTTGGTCTTAGCCTCCGGCTTGGTGGTGGCATCGGGTATGCTGTTCGGTCTGGCACTGACTTCCGGCGACGATAAAA
ATTCACCGTTTAAAGAAGCACCTGTCGGTCAGAGCCAAGTCAAAACGGCTGATGAGCCGAGCAATGCCGTTGTTTTAGAG
CCGAATAAAGAGGATGTTGCGATGGCTGAAGAAGCAGCCCGCCATGCGGATGCCGAAGCGCAAAGCAAACCTCAAAATGC
CGGCGACGAAGAAGACAATGCGCCGGTTGAAGTATTGAAGCCAAACCGTGAGTCTGCTCCCGAAGATGTCGGCGAGCCGT
TGGTTTTGATTAATGATACTTTGGATGACGGCAATATTAAAGGTTTGGAAGAGTCTGAGCGTATTCAACGAGCTGAGGCC
GCCAAACGCGAAGCTGCGGAGCGCCGAGCCGAAGAACGCCGCCAACGTCAGGCTGAGCAACGTGCTGCTGCTGCCCGTAA
AACACAAGCCCAACAGGAAGCTGCCGAGAAAGAAAACGCATTGGCAGCTAAAAAACGCGCACTTCAAGCGCGTGCTGAAA
AAGCAGAGCGTGAAGCCGCTGCCGAACGCAATAAATTGGCACAATTGGAAAAAGCAGAGAAAGCCATTGCCGAGCGTAAA
TCTGCCAAAAACAGCAAAGACAGCGTAAAAGACAAGGCCGAACCTGCCAAGAAAGCAGAAGCCAAAGTTGAAAAACCAAA
AAATGAAAAAGCTAAACCAGAAACGGCCAAAGCAGAAAAAGCCGATAAGGTAAAAACTGCCGAGAAGCCGTCTGAAAAAG
CCAAGCCTAAAGCTGAAAAAGAAACAGCAGAAGCCAAGCCTGCGAAAAAAGCTGCCATTCAGGCTGGTTATGCTGAAAAA
GAACGTGCGCAAAGCCTGCAACGTAAAATGAAAGCCGCAGGTATCGACTCGACCATTACTGAAGTGATGACCGATAAAGG
TAAGGTGTATCGCGTGAAATCAGCCAGTTATAAAAATGCACGCGATGCAGAGCGCGATTTGAACAAATTGCGTGTACATG
GCATTGCCGGTCAGGTGACCAGTGAGTAA

Domains

Predicted by InterproScan.

SPOR domain (SPOR)

(309-380)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tpc Neisseria gonorrhoeae MS11

48.985

100

0.505