Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   CYJ98_RS01720 Genome accession   NZ_CP136962
Coordinates   383987..386212 (+) Length   741 a.a.
NCBI ID   WP_101755046.1    Uniprot ID   A0A9X7F9D4
Organism   Neisseria perflava strain UMB0023     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context

Location: 378987..391212
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CYJ98_RS01690 (CYJ98_001690) metZ 379626..380795 (+) 1170 WP_101755043.1 O-succinylhomoserine sulfhydrylase -
  CYJ98_RS01695 (CYJ98_001695) - 380884..381090 (+) 207 WP_003747401.1 DUF2788 domain-containing protein -
  CYJ98_RS01700 (CYJ98_001700) - 381158..381949 (-) 792 WP_101755044.1 Cof-type HAD-IIB family hydrolase -
  CYJ98_RS01705 (CYJ98_001705) - 382148..383539 (-) 1392 WP_101755045.1 3'-5' exonuclease family protein -
  CYJ98_RS01720 (CYJ98_001720) comA 383987..386212 (+) 2226 WP_101755046.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  CYJ98_RS01725 (CYJ98_001725) - 386615..387247 (+) 633 WP_070625516.1 phosphoribosylanthranilate isomerase -
  CYJ98_RS01730 (CYJ98_001730) - 387272..387874 (+) 603 WP_070625528.1 DNA glycosylase -
  CYJ98_RS01735 (CYJ98_001735) - 387879..388289 (+) 411 WP_070625514.1 hypothetical protein -
  CYJ98_RS01740 (CYJ98_001740) trpB 388402..389604 (+) 1203 WP_101755047.1 tryptophan synthase subunit beta -
  CYJ98_RS01745 (CYJ98_001745) - 389799..390704 (+) 906 WP_049344019.1 DMT family transporter -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80992.52 Da        Isoelectric Point: 9.9156

>NTDB_id=893770 CYJ98_RS01720 WP_101755046.1 383987..386212(+) (comA) [Neisseria perflava strain UMB0023]
MAWRFVLPAWVVGVVLSFVLPVVPPWWVWLSVIIGALALCRRFAVAWLVLAVCVGMAFGVWRTGLVLAGQWPVGEVAAKV
LTVEVADMPRDDGRRVQFAARAWDERGQAFDLMLSDYQRRDWTVGSRWSVSARVKPVIGEVNVRGLNRETWALANGIDGM
GTLGRDRKFVRQGGGFGLANMRDAVSRSWQRTGDKYPEFSDGIGLMRALSIGEQSALRPPLWQAFRPLGLTHLVSISGLH
VTMVAVLFAWLIKRIFRYLPWIPAKPRVWILAGGVAGALFYALLAGFSVPTQRSVLMLAAFAWTWWRGSGGSGWTAWWQA
LAVVLLLDPLAVLGVGTWLSFGLVAALIWASSGRLKESGWRLAVRGQWAATVLSVVLLGYLFASLPLLSPLVNALAIPWF
SWVLTPLALLGSVFPFELVQLVAAFLAEYTLRGLVWLATASPEFAVAAAPVPLLVLAMMAALLLLLPKGMGLKPWACLVL
LGFVFYRPAKLEEGVARVTVMDAGQGLSVLIQTRNRNLLFDTGTEQVAQTGIVPSLNAMGVRRLDSLILSHHDIDHDGGF
QSVAAVGTDKLLAGQPEFYPNAEFCQEDKWQWDGVDFELLRPSENAGKEDNDQSCVLRVVANGKALLITGDLGVKGEAGL
IEKYGNALYSQVLVLGHHGSSTASSGSFLHTVSPQYAVASSGYANAYKHPTVAVQNRVRAHGITLLRTDLSGALVFALGQ
DDIFQGRLKKDKFYWQKKPFE

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=893770 CYJ98_RS01720 WP_101755046.1 383987..386212(+) (comA) [Neisseria perflava strain UMB0023]
ATGGCGTGGCGGTTTGTGTTGCCTGCTTGGGTGGTGGGTGTAGTGCTTTCGTTTGTTTTGCCGGTTGTGCCGCCATGGTG
GGTTTGGTTGTCTGTAATCATTGGCGCGCTTGCGTTGTGTCGAAGATTTGCTGTGGCTTGGTTGGTGCTAGCTGTTTGCG
TGGGCATGGCGTTTGGTGTGTGGCGGACCGGGCTGGTGTTGGCCGGTCAATGGCCTGTAGGGGAGGTGGCGGCTAAAGTT
TTGACGGTTGAAGTGGCGGATATGCCGCGTGATGATGGTCGGCGCGTGCAGTTTGCGGCAAGGGCTTGGGATGAGCGTGG
GCAGGCTTTTGATTTGATGTTGTCGGATTATCAGCGGCGCGATTGGACGGTGGGCAGTCGGTGGTCTGTATCGGCGCGGG
TAAAGCCGGTGATCGGTGAAGTGAATGTGCGTGGTTTGAACCGTGAAACCTGGGCTTTGGCCAATGGCATCGATGGCATG
GGTACTTTGGGGCGCGACAGGAAATTCGTGCGGCAAGGTGGCGGTTTCGGTTTGGCTAATATGCGTGATGCGGTAAGCCG
GAGTTGGCAGAGAACAGGGGACAAATATCCTGAGTTTTCAGACGGCATAGGGCTGATGCGTGCTTTGAGTATTGGCGAGC
AATCGGCGTTGAGGCCGCCTTTGTGGCAGGCATTCCGCCCTTTGGGACTGACGCACTTGGTCAGTATTTCGGGCTTGCAT
GTGACGATGGTGGCGGTATTGTTTGCCTGGCTGATTAAGCGAATTTTCCGTTATTTGCCGTGGATTCCGGCGAAACCGCG
TGTGTGGATATTGGCCGGTGGTGTTGCCGGTGCTTTGTTTTATGCGCTTTTGGCCGGTTTTTCTGTACCGACGCAACGCA
GTGTGTTGATGTTGGCTGCGTTTGCGTGGACATGGTGGCGCGGCAGTGGCGGCTCGGGCTGGACGGCGTGGTGGCAGGCT
TTGGCCGTTGTTTTGCTGTTGGACCCGTTGGCTGTATTGGGCGTGGGAACTTGGTTGTCTTTCGGCTTGGTTGCTGCTTT
GATTTGGGCTTCATCAGGCCGTCTGAAAGAGTCGGGCTGGCGTTTGGCTGTACGGGGGCAATGGGCGGCAACGGTATTGT
CGGTGGTATTGCTGGGCTATTTGTTTGCGTCGTTACCTTTGCTCAGTCCGTTGGTTAATGCGCTGGCTATTCCTTGGTTT
TCTTGGGTGTTGACGCCGTTGGCTTTGCTGGGTTCGGTTTTCCCGTTTGAACTTGTCCAGTTGGTAGCGGCATTTTTGGC
GGAATATACTTTACGCGGTTTGGTATGGCTGGCTACGGCATCGCCTGAATTTGCCGTCGCAGCGGCGCCCGTGCCTTTGC
TGGTATTGGCGATGATGGCGGCTTTGCTGTTATTGTTGCCTAAAGGTATGGGCTTGAAACCTTGGGCATGTCTGGTTTTA
TTGGGTTTTGTGTTTTACCGTCCTGCCAAGTTGGAGGAGGGGGTGGCAAGAGTTACCGTGATGGATGCAGGGCAAGGTTT
GTCGGTGTTGATACAAACGCGTAACCGCAATCTTTTGTTTGATACGGGAACGGAGCAAGTGGCGCAAACAGGTATTGTGC
CGAGTTTGAACGCTATGGGCGTGCGCCGTTTGGACAGCCTGATTTTGTCGCACCATGATATTGACCATGACGGCGGTTTT
CAAAGTGTAGCGGCTGTCGGTACCGATAAATTGCTTGCCGGACAACCTGAGTTTTATCCGAATGCAGAGTTTTGCCAAGA
AGACAAATGGCAATGGGACGGCGTAGATTTCGAGTTACTCAGGCCGTCTGAAAATGCAGGCAAGGAAGATAACGACCAAA
GCTGCGTATTGCGTGTCGTAGCAAACGGCAAAGCCTTGTTGATAACCGGCGATTTGGGCGTGAAAGGTGAGGCCGGTTTG
ATTGAGAAATACGGCAATGCGCTGTATAGCCAAGTGTTGGTGTTGGGACATCACGGCAGCAGCACGGCTTCGTCAGGCAG
CTTTTTGCATACGGTTTCGCCACAATATGCCGTGGCATCTAGCGGCTATGCCAATGCCTACAAACATCCGACCGTTGCCG
TACAAAATCGTGTCCGCGCGCATGGTATTACTTTATTGAGAACGGATTTGTCTGGCGCGTTGGTGTTTGCTTTGGGACAG
GACGATATATTTCAAGGCCGTCTGAAAAAGGATAAGTTTTATTGGCAGAAGAAACCGTTTGAGTAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(209-466)

Metallo-beta-lactamase superfamily (Lactamase_B)

(503-679)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Neisseria gonorrhoeae MS11

69.919

99.595

0.696