Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   OCU60_RS14145 Genome accession   NZ_AP024907
Coordinates   3160801..3161319 (-) Length   172 a.a.
NCBI ID   WP_074371842.1    Uniprot ID   A0A1N6M1I6
Organism   Vibrio spartinae strain CECT 9026     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3155801..3166319
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU60_RS14120 rimM 3155879..3156433 (-) 555 WP_074371837.1 ribosome maturation factor RimM -
  OCU60_RS14125 rpsP 3156456..3156704 (-) 249 WP_074371838.1 30S ribosomal protein S16 -
  OCU60_RS14130 ffh 3156882..3158249 (-) 1368 WP_074371839.1 signal recognition particle protein -
  OCU60_RS14135 - 3158502..3159296 (+) 795 WP_074371840.1 inner membrane protein YpjD -
  OCU60_RS14140 - 3159379..3160653 (+) 1275 WP_074371841.1 HlyC/CorC family transporter -
  OCU60_RS14145 luxS 3160801..3161319 (-) 519 WP_074371842.1 S-ribosylhomocysteine lyase Regulator
  OCU60_RS14150 gshA 3161470..3163071 (-) 1602 WP_074371843.1 glutamate--cysteine ligase -
  OCU60_RS14155 - 3163170..3166013 (-) 2844 WP_074371844.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18911.70 Da        Isoelectric Point: 4.9665

>NTDB_id=89377 OCU60_RS14145 WP_074371842.1 3160801..3161319(-) (luxS) [Vibrio spartinae strain CECT 9026]
MPLLDSFTVDHTRMNAPAVRVAKTMNTPKGDTITVFDLRFTIPNQDILSEKGIHTLEHLFAGFMRAHLNGNGVEIVDISP
MGCRTGFYMSLIGAPSEQRVADAWLAAMQDVLKVEDQNKIPELNIYQCGTAAMHSLGEAKDIAKTVISSGIRVNQNDDLA
LPESMLQELKVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=89377 OCU60_RS14145 WP_074371842.1 3160801..3161319(-) (luxS) [Vibrio spartinae strain CECT 9026]
ATGCCATTATTAGATAGTTTTACGGTGGATCATACACGTATGAATGCCCCAGCCGTCCGTGTTGCTAAAACAATGAATAC
CCCGAAAGGCGATACGATTACGGTGTTTGATTTACGCTTTACCATACCGAATCAAGATATCCTTTCCGAGAAAGGTATTC
ATACATTAGAACACTTATTTGCGGGCTTTATGAGAGCTCATCTCAATGGTAACGGTGTTGAAATTGTTGATATTTCCCCG
ATGGGATGTCGGACTGGCTTCTACATGAGCTTAATCGGTGCACCTTCTGAGCAGCGAGTTGCTGATGCTTGGTTAGCCGC
AATGCAGGATGTACTGAAGGTTGAAGACCAGAACAAAATTCCGGAATTAAACATTTATCAATGCGGAACTGCAGCGATGC
ACTCTCTGGGTGAGGCGAAAGACATTGCCAAAACTGTGATTTCAAGTGGTATTCGCGTGAATCAGAATGATGATCTGGCG
CTACCGGAATCAATGCTTCAGGAACTGAAAGTGGACTGA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1N6M1I6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

85.38

99.419

0.849

Multiple sequence alignment