Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   R3H61_RS01435 Genome accession   NZ_CP136951
Coordinates   269805..270875 (+) Length   356 a.a.
NCBI ID   WP_023612409.1    Uniprot ID   A0A5S4TIQ7
Organism   Streptococcus pyogenes strain Spyo09     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 264805..275875
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R3H61_RS01420 (R3H61_01420) amiA 265333..267303 (+) 1971 WP_024623426.1 peptide ABC transporter substrate-binding protein Regulator
  R3H61_RS01425 (R3H61_01425) amiC 267368..268870 (+) 1503 WP_330554698.1 ABC transporter permease Regulator
  R3H61_RS01430 (R3H61_01430) amiD 268870..269796 (+) 927 WP_002986004.1 oligopeptide ABC transporter permease OppC Regulator
  R3H61_RS01435 (R3H61_01435) amiE 269805..270875 (+) 1071 WP_023612409.1 ABC transporter ATP-binding protein Regulator
  R3H61_RS01440 (R3H61_01440) amiF 270868..271791 (+) 924 WP_002986000.1 ABC transporter ATP-binding protein Regulator
  R3H61_RS09045 - 271829..271912 (-) 84 Protein_237 IS3 family transposase -
  R3H61_RS01445 (R3H61_01445) - 271939..272133 (-) 195 WP_227868546.1 transposase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 39689.75 Da        Isoelectric Point: 5.6686

>NTDB_id=893703 R3H61_RS01435 WP_023612409.1 269805..270875(+) (amiE) [Streptococcus pyogenes strain Spyo09]
MTKENNVILTAKDVVVEFDVRDRVLTAIRNVSLELVEGEVLAFVGESGSGKSVLTKTFTGMLESNGRIANGSIVYRGQEL
TDLKTNKEWAKIRGSKIATIFQDPMTSLSPIKTIGSQITEVIIKHQKVSHAKAKEMALDYMNKVGIPNAKKRFEDYPFEY
SGGMRQRIVIAIALACRPDILICDEPTTALDVTIQAQIVELLKSLQREYHFTIIFITHDLGVVASIADKVAVMYAGEIVE
FGTVEEIFYDPRHPYTWSLLSSLPQLADDSGELYAIPGTPPSLYSPIIGDAFALRSEYAMVLDFEKAPPAINVSETHWAK
TWLLHPEAPKVQKPEVIQDLHQKILRKMSQQEEGNV

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=893703 R3H61_RS01435 WP_023612409.1 269805..270875(+) (amiE) [Streptococcus pyogenes strain Spyo09]
ATGACAAAAGAAAATAATGTAATCTTAACTGCCAAAGATGTGGTGGTAGAATTTGATGTGCGTGATCGTGTTTTAACAGC
TATCCGTAACGTCTCACTGGAACTTGTTGAAGGAGAAGTCCTTGCTTTTGTAGGGGAATCAGGCTCAGGTAAATCTGTTT
TAACAAAGACCTTTACAGGGATGTTGGAGTCTAATGGACGCATTGCTAATGGTTCAATTGTCTATCGTGGGCAAGAATTG
ACAGATTTAAAAACAAATAAAGAGTGGGCAAAGATTCGCGGCTCAAAAATCGCAACGATTTTCCAAGACCCAATGACCAG
TCTTAGTCCCATTAAAACTATCGGTAGCCAAATCACAGAAGTGATTATTAAGCACCAAAAAGTAAGTCATGCCAAAGCTA
AAGAAATGGCCCTTGATTACATGAATAAAGTGGGTATCCCAAATGCCAAAAAACGCTTTGAAGATTACCCATTTGAGTAT
TCAGGAGGAATGCGTCAACGTATTGTTATCGCTATTGCTTTAGCTTGTCGCCCAGATATTCTTATCTGTGATGAGCCAAC
AACAGCCCTTGATGTGACTATTCAAGCTCAAATCGTTGAGTTATTGAAGTCGCTTCAACGAGAATATCATTTCACCATTA
TCTTTATTACGCACGATTTAGGTGTTGTGGCAAGCATTGCAGATAAAGTGGCTGTCATGTATGCAGGAGAAATTGTTGAA
TTTGGAACAGTCGAAGAGATTTTCTATGATCCAAGACACCCCTATACATGGAGTTTGCTGTCTAGCTTACCGCAGTTGGC
AGATGATTCTGGTGAACTTTACGCTATTCCAGGAACGCCTCCATCACTTTATTCACCAATTATCGGAGATGCCTTTGCAC
TTCGCTCAGAATATGCTATGGTTTTAGACTTTGAAAAAGCACCTCCGGCGATTAACGTATCTGAGACTCATTGGGCCAAA
ACATGGCTTTTACACCCAGAGGCTCCAAAAGTTCAAAAACCAGAAGTCATTCAAGATTTGCATCAAAAAATCTTAAGGAA
AATGTCACAACAGGAGGAAGGAAATGTCTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(29-187)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(239-299)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5S4TIQ7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

76.944

100

0.778
  amiE Streptococcus thermophilus LMG 18311

75.833

100

0.767
  amiE Streptococcus thermophilus LMD-9

75.833

100

0.767
  oppD Streptococcus mutans UA159

56.677

94.663

0.537