Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OCU60_RS01380 Genome accession   NZ_AP024907
Coordinates   324556..325560 (+) Length   334 a.a.
NCBI ID   WP_074372208.1    Uniprot ID   A0A1N6M2Q8
Organism   Vibrio spartinae strain CECT 9026     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 319556..330560
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU60_RS01365 - 320054..321331 (-) 1278 WP_074372211.1 malic enzyme-like NAD(P)-binding protein -
  OCU60_RS01370 rpmE 321629..321850 (-) 222 WP_074372210.1 50S ribosomal protein L31 -
  OCU60_RS01375 priA 322101..324305 (+) 2205 WP_074372368.1 primosomal protein N' -
  OCU60_RS01380 cytR 324556..325560 (+) 1005 WP_074372208.1 DNA-binding transcriptional regulator CytR Regulator
  OCU60_RS01385 - 325678..326226 (+) 549 WP_074372207.1 SPOR domain-containing protein -
  OCU60_RS01390 hslV 326369..326908 (+) 540 WP_074372206.1 ATP-dependent protease subunit HslV -
  OCU60_RS01395 hslU 326953..328284 (+) 1332 WP_074372205.1 HslU--HslV peptidase ATPase subunit -
  OCU60_RS01400 - 328466..329383 (+) 918 WP_074372204.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  OCU60_RS01405 rraA 329459..330037 (+) 579 WP_074372367.1 ribonuclease E activity regulator RraA -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 36676.23 Da        Isoelectric Point: 6.6914

>NTDB_id=89363 OCU60_RS01380 WP_074372208.1 324556..325560(+) (cytR) [Vibrio spartinae strain CECT 9026]
MATMKDVAQLAGVSTATVSRALMNPEKVSPTTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVAIVPDICDPYFTEIIRG
IEDAAVEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDASKSEQKNLPPMVMACEYAPELELPTVHIDN
LTSAFEVVNYLTQMGHKKIGEIAGPDSAALCHFRHQGYMQALRRAGITINPAYHYKGDFSFEAGVKAIRLLLGLSEPPGA
VFCHNDMMAIGAIQEAKRLGVRVPQDLSVVGFDDINFAQYCDPPLTTVSQPRYEIGRQAMLMMLEVLRGHDVRAGSRLLE
TKLVIRESVASPRG

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=89363 OCU60_RS01380 WP_074372208.1 324556..325560(+) (cytR) [Vibrio spartinae strain CECT 9026]
ATGGCGACAATGAAGGATGTTGCTCAACTAGCGGGAGTGTCGACCGCGACCGTATCTAGGGCATTGATGAATCCCGAAAA
AGTGTCGCCTACGACAAGAAAACGGGTTGAAGATGCAGTCCTTGAAGCCGGATATTCTCCGAATTCACTGGCACGAAATT
TAAGACGTAACGAATCAAAGACGATTGTTGCGATTGTTCCTGATATCTGTGATCCGTATTTTACTGAAATAATCCGGGGT
ATTGAGGATGCTGCTGTCGAGCATGGTTATTTAGTGCTACTTGGTGATAGCGGACAACAGAAGAAACGCGAAAGTTCTTT
TGTTAATCTGGTCTTTACCAAACAAGCCGATGGCATGTTACTCCTTGGTACCGATTTACCATTTGATGCCAGTAAGTCAG
AACAGAAAAATTTACCTCCGATGGTGATGGCCTGTGAGTATGCACCGGAGCTGGAATTGCCGACCGTCCATATAGATAAT
CTGACTTCTGCGTTTGAAGTGGTCAATTATCTCACTCAGATGGGCCATAAAAAGATTGGTGAGATTGCCGGCCCCGATTC
AGCGGCTTTGTGTCATTTCCGTCATCAGGGATATATGCAGGCTTTAAGACGTGCCGGTATTACGATAAATCCTGCGTATC
ATTACAAAGGTGATTTCAGTTTTGAAGCGGGTGTGAAAGCGATTCGGCTCCTTTTAGGGTTGTCTGAGCCTCCGGGGGCT
GTTTTCTGCCACAATGACATGATGGCTATCGGTGCCATTCAGGAAGCAAAACGCCTGGGTGTCAGAGTGCCTCAGGACCT
GTCGGTGGTTGGTTTCGATGATATCAACTTTGCTCAGTATTGTGATCCACCATTAACGACTGTCTCTCAGCCTCGGTATG
AGATTGGCCGTCAGGCGATGCTGATGATGTTAGAGGTGCTCCGGGGGCACGATGTTCGGGCGGGCTCTCGTTTGCTGGAA
ACAAAACTGGTGATACGAGAAAGTGTTGCTTCTCCTCGCGGATAA

Domains

Predicted by InterproScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-329)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1N6M2Q8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

87.349

99.401

0.868
  cytR Vibrio parahaemolyticus RIMD 2210633

84.985

99.701

0.847

Multiple sequence alignment