Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   AAH980_RS08670 Genome accession   NZ_CP154856
Coordinates   1869433..1869795 (-) Length   120 a.a.
NCBI ID   WP_002051151.1    Uniprot ID   A0AA36K978
Organism   Acinetobacter nosocomialis strain Ab25     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1864433..1874795
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAH980_RS08660 (AAH980_08660) - 1866711..1868792 (-) 2082 WP_284080691.1 methyl-accepting chemotaxis protein -
  AAH980_RS08665 (AAH980_08665) - 1868839..1869375 (-) 537 WP_004885375.1 chemotaxis protein CheW -
  AAH980_RS08670 (AAH980_08670) pilH 1869433..1869795 (-) 363 WP_002051151.1 response regulator Machinery gene
  AAH980_RS08675 (AAH980_08675) pilG 1869822..1870205 (-) 384 WP_000389061.1 twitching motility response regulator PilG Regulator
  AAH980_RS08680 (AAH980_08680) - 1870488..1871126 (+) 639 WP_004885373.1 hypothetical protein -
  AAH980_RS08685 (AAH980_08685) - 1871186..1872304 (+) 1119 WP_151763494.1 efflux RND transporter periplasmic adaptor subunit -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13523.49 Da        Isoelectric Point: 4.9102

>NTDB_id=893607 AAH980_RS08670 WP_002051151.1 1869433..1869795(-) (pilH) [Acinetobacter nosocomialis strain Ab25]
MARILIVDDSPTETYRFREILTKHGYDVIEASNGADGVTLAKAEQPDLVLMDVVMPGVNGFQATRQITRDEDTKHIPVVI
VSTKDQATDRVWGKRQGALDYLIKPIEEKQLIDVIKQFLN

Nucleotide


Download         Length: 363 bp        

>NTDB_id=893607 AAH980_RS08670 WP_002051151.1 1869433..1869795(-) (pilH) [Acinetobacter nosocomialis strain Ab25]
ATGGCACGTATTCTTATTGTTGATGACTCACCAACAGAAACTTATCGTTTTAGAGAAATTCTAACTAAGCACGGTTACGA
TGTAATTGAAGCATCTAATGGCGCAGATGGTGTAACTTTGGCAAAAGCAGAACAGCCTGACTTAGTGTTAATGGATGTTG
TAATGCCAGGTGTAAATGGCTTTCAGGCAACACGCCAGATTACCCGTGATGAAGACACTAAGCATATTCCAGTTGTTATT
GTAAGTACTAAAGATCAGGCAACTGACCGAGTATGGGGTAAACGTCAGGGTGCTCTCGATTACTTGATTAAGCCTATTGA
AGAAAAGCAACTGATCGATGTAATTAAACAATTTCTAAATTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AA36K978

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

39.496

99.167

0.392