Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   OCU42_RS18935 Genome accession   NZ_AP024906
Coordinates   886060..887235 (-) Length   391 a.a.
NCBI ID   WP_077334549.1    Uniprot ID   -
Organism   Vibrio ruber strain LMG 23124     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 881060..892235
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU42_RS18915 - 881288..881542 (-) 255 WP_077336631.1 hypothetical protein -
  OCU42_RS18920 - 881669..882801 (+) 1133 WP_235862897.1 IS3 family transposase -
  OCU42_RS18925 - 882769..883344 (-) 576 WP_139344038.1 hypothetical protein -
  OCU42_RS18930 - 884221..886002 (+) 1782 WP_306345797.1 hybrid sensor histidine kinase/response regulator -
  OCU42_RS18935 cqsA 886060..887235 (-) 1176 WP_077334549.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  OCU42_RS18940 - 887678..890752 (-) 3075 WP_077334551.1 efflux RND transporter permease subunit -
  OCU42_RS18945 - 890756..891898 (-) 1143 WP_077334553.1 efflux RND transporter periplasmic adaptor subunit -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 43911.95 Da        Isoelectric Point: 5.5821

>NTDB_id=89360 OCU42_RS18935 WP_077334549.1 886060..887235(-) (cqsA) [Vibrio ruber strain LMG 23124]
MNSISKNLPDFIQSKINFHIRDLIESNNNGKHLVLGKRPNNQDIVMQSNDYLCLANNSMIKSQMIDSIMRMDDSILMSAI
YLQDEDSKPSIEHRLSEFTNFDSCLLSQSGWNANIGLLQAICSPETNVYIDFFTHMSIWEGARYANAKVHPFMHNNMKHL
RKLIKRNGPGIIAVDSIYSTLGTIAPLRELVDIAKEFGCVTVIDESHSLGIYGTHGAGLIEELNLSKEVDFMTASLAKSF
AYRAGAIWANNNVNQCIPFVSYPAIFSSALLPYDIDTLGAILDSIYDSDDKRNHLFYLSDKLRKGLTKIGIKVRSQSQIV
SLETGDEENTELVRDYLEDNGVFGAVFCRPATPKNSNLIRFSLNSSLTDNDIDKILSVCHTLVEDEKVYFK

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=89360 OCU42_RS18935 WP_077334549.1 886060..887235(-) (cqsA) [Vibrio ruber strain LMG 23124]
ATGAACAGTATTAGTAAAAATTTACCAGATTTCATTCAGTCAAAAATAAACTTTCATATTCGTGACTTAATTGAATCTAA
TAATAATGGGAAACATCTTGTTTTAGGAAAGCGTCCCAATAATCAAGATATTGTGATGCAAAGTAATGATTACTTATGTT
TGGCAAATAATAGCATGATAAAAAGTCAAATGATCGACTCAATTATGAGAATGGATGATAGTATTTTGATGTCTGCTATT
TATTTACAAGATGAAGATTCGAAACCGTCTATAGAACACCGGCTTTCGGAATTTACTAACTTTGATAGTTGTTTACTCTC
ACAATCAGGGTGGAATGCTAATATTGGATTATTACAGGCGATTTGTTCACCAGAGACCAATGTCTATATTGATTTTTTCA
CTCATATGTCAATATGGGAAGGGGCTCGATATGCGAATGCGAAAGTTCATCCATTTATGCATAATAACATGAAACATTTA
CGGAAATTGATTAAAAGAAATGGTCCGGGGATTATTGCTGTTGATTCGATATACAGTACATTAGGTACGATTGCGCCATT
GAGAGAGTTGGTTGATATTGCAAAAGAGTTTGGTTGTGTAACGGTCATTGATGAATCGCATTCTCTTGGTATCTATGGCA
CACATGGTGCGGGTCTGATTGAGGAGTTGAATTTATCAAAAGAGGTTGATTTTATGACTGCGAGTTTAGCAAAATCCTTT
GCATATAGAGCTGGTGCGATATGGGCAAATAATAATGTTAATCAGTGTATACCTTTTGTTAGTTATCCAGCGATATTTAG
TTCTGCTCTATTACCCTATGATATCGATACACTCGGTGCCATATTGGATTCGATATATGATTCAGATGATAAAAGGAATC
ATCTTTTTTATCTTTCTGATAAATTAAGAAAAGGACTCACAAAAATCGGAATTAAAGTTAGAAGTCAGTCTCAGATTGTA
TCACTAGAAACTGGGGATGAAGAGAATACAGAATTAGTGCGTGATTATCTAGAGGATAATGGGGTTTTTGGGGCAGTTTT
TTGTCGGCCAGCTACACCTAAAAATAGTAATTTAATTCGATTTTCTTTAAATAGTTCTCTGACAGACAATGATATTGATA
AAATATTGTCAGTCTGCCACACATTAGTAGAAGATGAAAAAGTATATTTTAAATAG

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(45-376)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

63.542

98.21

0.624

Multiple sequence alignment