Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   AAH980_RS02200 Genome accession   NZ_CP154856
Coordinates   457059..457694 (+) Length   211 a.a.
NCBI ID   WP_151863853.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis strain Ab25     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 452059..462694
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAH980_RS02175 (AAH980_02175) - 452899..453912 (+) 1014 WP_284080196.1 phosphotransferase -
  AAH980_RS02180 (AAH980_02180) murU 453912..454601 (+) 690 WP_151863854.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  AAH980_RS02185 (AAH980_02185) rsmG 454689..455321 (+) 633 WP_002050181.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  AAH980_RS02190 (AAH980_02190) - 455343..456125 (+) 783 WP_002050124.1 AAA family ATPase -
  AAH980_RS02195 (AAH980_02195) - 456122..457009 (+) 888 WP_139887436.1 ParB/RepB/Spo0J family partition protein -
  AAH980_RS02200 (AAH980_02200) exbB 457059..457694 (+) 636 WP_151863853.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  AAH980_RS02205 (AAH980_02205) - 457710..458138 (+) 429 WP_000669684.1 biopolymer transporter ExbD -
  AAH980_RS02210 (AAH980_02210) msbA 458135..459862 (+) 1728 WP_006580783.1 lipid A export permease/ATP-binding protein MsbA -
  AAH980_RS02215 (AAH980_02215) lpxK 459865..460875 (+) 1011 WP_151863852.1 tetraacyldisaccharide 4'-kinase -
  AAH980_RS02220 (AAH980_02220) kdsB 460885..461646 (+) 762 WP_151687044.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  AAH980_RS02225 (AAH980_02225) - 461658..462638 (+) 981 WP_284080193.1 DNA polymerase III subunit delta' -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23105.94 Da        Isoelectric Point: 6.6434

>NTDB_id=893586 AAH980_RS02200 WP_151863853.1 457059..457694(+) (exbB) [Acinetobacter nosocomialis strain Ab25]
MWELVKAGGWLMLPLILCSILTVAISIERFIRLRRSQVLPKALMSDGGADISHIITNLEQDTDASSTALGNILKAGFEHQ
EHGEQFARAQMEAMASQEISYLEKNINFLGTLSAIAPLLGLLGTVVGIIESFLVIDFGSAGSPSLMIPGISKALITTAVG
MLIAIPALISYRYFQRVVQNYIAELEQQSTLFHASLFYKRSSVVQEHRRVG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=893586 AAH980_RS02200 WP_151863853.1 457059..457694(+) (exbB) [Acinetobacter nosocomialis strain Ab25]
ATGTGGGAACTTGTGAAAGCGGGCGGCTGGTTAATGCTGCCTTTAATTTTGTGTTCAATTTTAACGGTCGCTATTAGTAT
TGAACGTTTTATACGTTTGAGACGTTCACAAGTTTTGCCTAAAGCACTGATGAGTGATGGTGGTGCAGATATTTCTCATA
TCATCACAAATTTGGAGCAAGATACTGATGCCTCAAGTACAGCATTAGGAAATATTCTAAAAGCTGGTTTTGAGCATCAG
GAGCATGGAGAGCAATTTGCTCGGGCTCAAATGGAAGCAATGGCTTCTCAAGAAATTTCTTATTTAGAAAAAAATATTAA
CTTCTTGGGAACTTTAAGTGCTATAGCACCTTTGCTTGGGTTACTTGGAACAGTTGTAGGGATTATTGAGTCTTTTCTCG
TGATTGATTTTGGTTCGGCAGGTAGTCCAAGTTTAATGATTCCTGGTATTTCAAAGGCCTTGATCACGACAGCGGTTGGA
ATGCTCATTGCAATTCCTGCACTTATTTCTTATCGTTATTTTCAGAGAGTGGTGCAAAATTACATTGCGGAGTTAGAGCA
GCAATCTACACTCTTTCATGCATCATTGTTTTATAAACGTTCTTCTGTTGTGCAAGAACATCGCCGTGTTGGTTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

41.981

100

0.422