Detailed information NTG0089358

Bioinformatically predicted

Overview

• Name: luxP
• Type: Regulator
• Locus tag: OCU42_RS17275
• Genome accession: NZ_AP024906
• Coordinates: 489787..490872 (+)
• Length: 361 a.a.
• NCBI ID: WP_077333482.1
• Uniprot ID: A0A1R4LCC5
• Organism: Vibrio ruber strain LMG 23124
• Function: autoinducer sensor (predicted from homology) Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IScluster/Tn	484692..489639	489787..490872	flank	148

Gene organization within MGE regions

Location: 484692..490872

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OCU42_RS17235	tnpA	484692..485153 (-)	462	WP_261855949.1	IS200/IS605 family transposase	-
OCU42_RS17240	-	485350..485823 (-)	474	WP_077337564.1	peroxiredoxin	-
OCU42_RS17245	-	486030..486347 (-)	318	WP_074371103.1	DUF496 family protein	-
OCU42_RS17250	-	486573..486770 (+)	198	WP_077337563.1	hypothetical protein	-
OCU42_RS17255	-	486829..487479 (+)	651	WP_077337562.1	YceH family protein	-
OCU42_RS17260	-	487483..487776 (+)	294	WP_205409491.1	GIY-YIG nuclease family protein	-
OCU42_RS17265	traF	487852..488997 (+)	1146	WP_077337560.1	conjugal transfer protein TraF	-
OCU42_RS17270	tnpA	489178..489639 (+)	462	WP_261855949.1	IS200/IS605 family transposase	-
OCU42_RS17275	luxP	489787..490872 (+)	1086	WP_077333482.1	autoinducer 2-binding periplasmic protein LuxP	Regulator

Sequence

Protein

• Length: 361 a.a.
• Molecular weight: 41517.36 Da
• Isoelectric Point: 6.7796

>NTDB_id=89358 OCU42_RS17275 WP_077333482.1 489787..490872(+) (luxP) [Vibrio ruber strain LMG 23124]
MRLFGVILTTCFFLIYHSAAYALSGYWHYNEYLDLNPDQKQLTLSLANAVRLEPKPLQATQENPVKISVIYPGQQVSDYW
SRNIRAFELRLNELGVKYEIHQVFTRPNLDIRQQSLSLMEALKNKSDYLIFTLDTTRHKKFIEHVLRGGETKLIIQNVTT
PVKDWAHRQPWMYIGFDHEIGTSLLVDYFKKTLKPHSPYSVLYFSQGYVSAARGDTFIQAMTEYPLVSSFYTQANQESAY
KITLENMREHPEIKLLYACSTDVALGAVKALKELGREDVLINGWGGGSAELEALQHHDLNVTVMRMNDDTGVAMAEAIKW
DLEGKKVPTVYSGDFEVVSSEDKPDRIEMLKQRAFRYSDRH

Nucleotide

• Length: 1086 bp

>NTDB_id=89358 OCU42_RS17275 WP_077333482.1 489787..490872(+) (luxP) [Vibrio ruber strain LMG 23124]
ATGAGACTTTTTGGAGTTATTTTAACCACCTGCTTTTTTCTTATTTATCACTCAGCAGCTTACGCATTAAGTGGTTACTG
GCATTACAACGAATATCTTGATTTAAATCCGGATCAAAAACAACTGACTCTTTCTTTAGCAAATGCGGTTCGACTTGAGC
CGAAGCCATTACAGGCGACGCAGGAAAATCCGGTAAAAATATCGGTGATTTATCCTGGGCAGCAAGTATCGGACTATTGG
AGCCGTAATATCCGAGCCTTTGAATTGCGTTTAAATGAACTTGGGGTCAAGTATGAAATTCATCAGGTATTTACCCGGCC
GAATCTGGATATCCGCCAACAAAGTCTCTCTTTGATGGAGGCATTAAAAAATAAATCCGACTATTTGATTTTTACGCTTG
ATACCACCAGACACAAAAAATTTATTGAACATGTGTTAAGAGGCGGAGAGACCAAACTGATTATCCAGAATGTGACTACA
CCAGTGAAAGACTGGGCACATCGACAACCATGGATGTATATCGGTTTTGATCATGAAATAGGAACCAGTTTGCTGGTGGA
CTATTTTAAGAAGACATTAAAGCCCCATTCACCTTATTCCGTATTGTATTTTTCTCAAGGCTATGTGAGCGCTGCCCGGG
GCGATACGTTTATTCAAGCAATGACGGAATATCCGCTTGTATCGTCATTTTATACCCAGGCTAATCAGGAGAGTGCTTAT
AAAATCACGCTTGAGAATATGAGAGAACATCCGGAGATTAAATTATTGTATGCCTGTTCAACCGATGTTGCTCTCGGGGC
AGTCAAAGCATTGAAAGAGCTCGGCCGGGAAGATGTTCTTATCAATGGTTGGGGTGGCGGTTCAGCCGAGCTGGAGGCTT
TGCAGCATCATGATTTGAATGTCACAGTGATGCGAATGAATGATGACACCGGTGTCGCAATGGCCGAAGCCATCAAGTGG
GATCTTGAAGGTAAAAAGGTACCGACGGTTTATTCCGGAGACTTTGAAGTTGTATCCAGTGAAGATAAGCCTGATAGAAT
TGAGATGTTGAAACAGCGTGCATTCCGATATTCTGATCGACACTGA

Domains

Predicted by InterproScan.

• Periplasmic binding protein domain (Peripla_BP_4) (67-319)

3D structure

• AlphaFold DB: A0A1R4LCC5

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
luxP	Vibrio cholerae strain A1552	66.57	95.291	0.634