Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   OCU42_RS17275 Genome accession   NZ_AP024906
Coordinates   489787..490872 (+) Length   361 a.a.
NCBI ID   WP_077333482.1    Uniprot ID   A0A1R4LCC5
Organism   Vibrio ruber strain LMG 23124     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 484787..495872
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU42_RS17240 - 485350..485823 (-) 474 WP_077337564.1 peroxiredoxin -
  OCU42_RS17245 - 486030..486347 (-) 318 WP_074371103.1 DUF496 family protein -
  OCU42_RS17250 - 486573..486770 (+) 198 WP_077337563.1 hypothetical protein -
  OCU42_RS17255 - 486829..487479 (+) 651 WP_077337562.1 YceH family protein -
  OCU42_RS17260 - 487483..487776 (+) 294 WP_205409491.1 GIY-YIG nuclease family protein -
  OCU42_RS17265 traF 487852..488997 (+) 1146 WP_077337560.1 conjugal transfer protein TraF -
  OCU42_RS17270 tnpA 489178..489639 (+) 462 WP_261855949.1 IS200/IS605 family transposase -
  OCU42_RS17275 luxP 489787..490872 (+) 1086 WP_077333482.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  OCU42_RS17280 luxQ 490914..493499 (+) 2586 WP_077333484.1 LuxQ periplasmic sensor domain-containing protein Regulator
  OCU42_RS17285 - 493588..494115 (-) 528 WP_077333486.1 hypothetical protein -
  OCU42_RS17290 - 494292..495767 (+) 1476 WP_077333488.1 cobyric acid synthase -

Sequence

Protein


Download         Length: 361 a.a.        Molecular weight: 41517.36 Da        Isoelectric Point: 6.7796

>NTDB_id=89358 OCU42_RS17275 WP_077333482.1 489787..490872(+) (luxP) [Vibrio ruber strain LMG 23124]
MRLFGVILTTCFFLIYHSAAYALSGYWHYNEYLDLNPDQKQLTLSLANAVRLEPKPLQATQENPVKISVIYPGQQVSDYW
SRNIRAFELRLNELGVKYEIHQVFTRPNLDIRQQSLSLMEALKNKSDYLIFTLDTTRHKKFIEHVLRGGETKLIIQNVTT
PVKDWAHRQPWMYIGFDHEIGTSLLVDYFKKTLKPHSPYSVLYFSQGYVSAARGDTFIQAMTEYPLVSSFYTQANQESAY
KITLENMREHPEIKLLYACSTDVALGAVKALKELGREDVLINGWGGGSAELEALQHHDLNVTVMRMNDDTGVAMAEAIKW
DLEGKKVPTVYSGDFEVVSSEDKPDRIEMLKQRAFRYSDRH

Nucleotide


Download         Length: 1086 bp        

>NTDB_id=89358 OCU42_RS17275 WP_077333482.1 489787..490872(+) (luxP) [Vibrio ruber strain LMG 23124]
ATGAGACTTTTTGGAGTTATTTTAACCACCTGCTTTTTTCTTATTTATCACTCAGCAGCTTACGCATTAAGTGGTTACTG
GCATTACAACGAATATCTTGATTTAAATCCGGATCAAAAACAACTGACTCTTTCTTTAGCAAATGCGGTTCGACTTGAGC
CGAAGCCATTACAGGCGACGCAGGAAAATCCGGTAAAAATATCGGTGATTTATCCTGGGCAGCAAGTATCGGACTATTGG
AGCCGTAATATCCGAGCCTTTGAATTGCGTTTAAATGAACTTGGGGTCAAGTATGAAATTCATCAGGTATTTACCCGGCC
GAATCTGGATATCCGCCAACAAAGTCTCTCTTTGATGGAGGCATTAAAAAATAAATCCGACTATTTGATTTTTACGCTTG
ATACCACCAGACACAAAAAATTTATTGAACATGTGTTAAGAGGCGGAGAGACCAAACTGATTATCCAGAATGTGACTACA
CCAGTGAAAGACTGGGCACATCGACAACCATGGATGTATATCGGTTTTGATCATGAAATAGGAACCAGTTTGCTGGTGGA
CTATTTTAAGAAGACATTAAAGCCCCATTCACCTTATTCCGTATTGTATTTTTCTCAAGGCTATGTGAGCGCTGCCCGGG
GCGATACGTTTATTCAAGCAATGACGGAATATCCGCTTGTATCGTCATTTTATACCCAGGCTAATCAGGAGAGTGCTTAT
AAAATCACGCTTGAGAATATGAGAGAACATCCGGAGATTAAATTATTGTATGCCTGTTCAACCGATGTTGCTCTCGGGGC
AGTCAAAGCATTGAAAGAGCTCGGCCGGGAAGATGTTCTTATCAATGGTTGGGGTGGCGGTTCAGCCGAGCTGGAGGCTT
TGCAGCATCATGATTTGAATGTCACAGTGATGCGAATGAATGATGACACCGGTGTCGCAATGGCCGAAGCCATCAAGTGG
GATCTTGAAGGTAAAAAGGTACCGACGGTTTATTCCGGAGACTTTGAAGTTGTATCCAGTGAAGATAAGCCTGATAGAAT
TGAGATGTTGAAACAGCGTGCATTCCGATATTCTGATCGACACTGA

Domains

Predicted by InterProScan.

Periplasmic binding protein domain (Peripla_BP_4)

(67-319)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

66.57

95.291

0.634

Multiple sequence alignment