Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   RJD36_RS01900 Genome accession   NZ_CP136943
Coordinates   344246..344971 (+) Length   241 a.a.
NCBI ID   WP_117479971.1    Uniprot ID   -
Organism   Streptococcus pasteurianus strain WUSP082     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 339246..349971
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJD36_RS01875 (RJD36_01875) - 339642..340133 (+) 492 WP_053092473.1 PTS glucose transporter subunit IIA -
  RJD36_RS01880 (RJD36_01880) - 340147..341619 (+) 1473 WP_101774347.1 glycoside hydrolase family 1 protein -
  RJD36_RS01890 (RJD36_01890) - 343464..343766 (-) 303 WP_003063390.1 hypothetical protein -
  RJD36_RS01895 (RJD36_01895) - 343763..344182 (-) 420 WP_117479973.1 HIT family protein -
  RJD36_RS01900 (RJD36_01900) pptA 344246..344971 (+) 726 WP_117479971.1 ABC transporter ATP-binding protein Regulator
  RJD36_RS01905 (RJD36_01905) - 344973..346007 (+) 1035 WP_003063395.1 ABC transporter permease -
  RJD36_RS01910 (RJD36_01910) ccrZ 346072..346866 (+) 795 WP_012961430.1 cell cycle regulator CcrZ -
  RJD36_RS01915 (RJD36_01915) trmB 346866..347504 (+) 639 WP_003063401.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  RJD36_RS01925 (RJD36_01925) - 348030..348507 (+) 478 Protein_317 hypothetical protein -
  RJD36_RS01930 (RJD36_01930) rimP 348760..349245 (+) 486 WP_172456429.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 26778.12 Da        Isoelectric Point: 4.4838

>NTDB_id=893532 RJD36_RS01900 WP_117479971.1 344246..344971(+) (pptA) [Streptococcus pasteurianus strain WUSP082]
MLKIENITGGYINIPVLKNISFEVGDGELIGLIGLNGAGKSTTINEIIGLLTPYQGQISIDGLTLAQNQAEYRKKIGFIP
ETPSLYEELTLREHLETVAMAYDLNYDEAMARATELLELFRLSDKLEWFPINFSKGMKQKLMIICAFMVNPSLFIVDEPF
LGLDPLAISDLTELLAQEKAKGKAILMSTHVLDAAEKMCDRFVILHQGKIRATGTLAELREAFGDETATLNDIYMSLTKE
V

Nucleotide


Download         Length: 726 bp        

>NTDB_id=893532 RJD36_RS01900 WP_117479971.1 344246..344971(+) (pptA) [Streptococcus pasteurianus strain WUSP082]
ATGTTAAAAATTGAAAATATAACTGGGGGATATATTAACATCCCTGTCTTAAAAAATATTTCTTTTGAAGTTGGTGATGG
TGAGCTTATTGGCTTAATTGGTTTGAATGGGGCTGGTAAGTCAACGACAATCAATGAAATTATTGGGCTCTTAACGCCAT
ATCAAGGGCAAATTTCGATTGATGGTTTGACTTTGGCGCAGAATCAGGCAGAATATCGTAAGAAAATTGGATTTATCCCA
GAAACGCCAAGTTTATATGAAGAATTGACTCTACGTGAACATTTAGAAACAGTTGCAATGGCTTATGACCTTAATTATGA
TGAGGCGATGGCGCGTGCGACAGAATTGTTGGAACTTTTCCGTTTATCTGATAAATTAGAGTGGTTTCCGATTAATTTCT
CTAAAGGGATGAAGCAGAAGCTCATGATTATTTGTGCCTTTATGGTTAATCCAAGTTTGTTTATCGTTGATGAGCCCTTT
TTGGGCTTGGACCCATTAGCAATTTCTGATTTGACAGAATTATTGGCGCAAGAAAAGGCAAAAGGAAAAGCGATTTTGAT
GTCAACACACGTTTTGGATGCTGCTGAAAAGATGTGTGACCGTTTTGTGATTTTGCATCAAGGGAAAATTCGTGCAACTG
GTACATTAGCAGAGCTACGTGAAGCATTTGGTGATGAGACAGCAACGCTTAATGATATTTATATGTCATTGACTAAAGAG
GTGTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

78.661

99.17

0.78
  pptA Streptococcus thermophilus LMD-9

78.243

99.17

0.776