Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   OCU42_RS10575 Genome accession   NZ_AP024905
Coordinates   2397894..2399294 (-) Length   466 a.a.
NCBI ID   WP_077336063.1    Uniprot ID   -
Organism   Vibrio ruber strain LMG 23124     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2392894..2404294
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU42_RS10535 - 2392932..2393348 (-) 417 WP_077336050.1 CBS domain-containing protein -
  OCU42_RS10540 moaE 2393526..2393978 (-) 453 WP_077336052.1 molybdopterin synthase catalytic subunit MoaE -
  OCU42_RS10545 moaD 2393980..2394225 (-) 246 WP_077336054.1 molybdopterin synthase sulfur carrier subunit -
  OCU42_RS10550 moaC 2394222..2394701 (-) 480 WP_077336056.1 cyclic pyranopterin monophosphate synthase MoaC -
  OCU42_RS10555 moaB 2394720..2395226 (-) 507 WP_077336058.1 molybdenum cofactor biosynthesis protein B -
  OCU42_RS10560 moaA 2395281..2396264 (-) 984 WP_077336059.1 GTP 3',8-cyclase MoaA -
  OCU42_RS10565 yvcK 2396570..2397508 (+) 939 WP_077336097.1 uridine diphosphate-N-acetylglucosamine-binding protein YvcK -
  OCU42_RS10570 luxU 2397541..2397891 (-) 351 WP_077336061.1 quorum-sensing phosphorelay protein LuxU -
  OCU42_RS10575 luxO 2397894..2399294 (-) 1401 WP_077336063.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  OCU42_RS10580 uvrB 2399556..2401586 (-) 2031 WP_077336065.1 excinuclease ABC subunit UvrB -
  OCU42_RS10590 - 2402348..2403229 (-) 882 WP_077336069.1 LysR family transcriptional regulator -
  OCU42_RS10595 budA 2403326..2404111 (+) 786 WP_077336071.1 acetolactate decarboxylase -

Sequence

Protein


Download         Length: 466 a.a.        Molecular weight: 52480.06 Da        Isoelectric Point: 5.0303

>NTDB_id=89350 OCU42_RS10575 WP_077336063.1 2397894..2399294(-) (luxO) [Vibrio ruber strain LMG 23124]
MQSEQLPQKSRYLLMVEDTASVAVLYRTYLEPLDIDINIVGTGKEALESLEKREPDLILLDLRLPDMTGMDVLHEVKRKY
PDVPVIFMTAHGSIDTAVEAMRYGAQDFLIKPCEADRLRVTVNNAIRKASKIKSDSDDPRSQNYQGFIGSSQTMQAVYRT
IDSAAASKASIFITGESGTGKEVCAEAIHAASRRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGDDVIEIAYSLLGYMSKEEEKDFVRLAAEVVERFRQYEWPGNVRQLQNVLRNVVVLNQGKEITLSMLPPPLNQPKESYL
RLVQPMMEDRKPSVHEIFPLWMTEKMAIENAIDACEGNIPKAAGYLEVSPSTIYRKLQSWNAEENA

Nucleotide


Download         Length: 1401 bp        

>NTDB_id=89350 OCU42_RS10575 WP_077336063.1 2397894..2399294(-) (luxO) [Vibrio ruber strain LMG 23124]
ATGCAATCTGAACAGTTACCACAAAAAAGTAGATATCTGCTGATGGTTGAAGATACAGCCTCGGTTGCCGTGCTGTATCG
AACCTACCTTGAGCCTCTGGATATTGACATCAATATTGTCGGTACCGGGAAAGAGGCATTGGAGAGTCTTGAAAAAAGAG
AACCCGATCTGATACTGCTTGATTTACGTCTTCCGGATATGACAGGGATGGATGTTTTACACGAGGTGAAACGGAAATAC
CCGGATGTTCCCGTTATTTTTATGACAGCTCACGGCTCAATCGATACGGCTGTCGAAGCCATGCGCTATGGTGCTCAGGA
TTTTTTAATTAAACCATGCGAAGCTGACCGATTACGTGTCACGGTGAATAATGCAATTCGCAAAGCTTCAAAAATTAAAA
GTGATTCTGATGATCCGCGCAGCCAAAACTATCAGGGATTCATCGGCAGTAGTCAAACTATGCAGGCTGTTTATCGAACC
ATTGACTCTGCGGCAGCGAGTAAAGCCAGTATCTTTATTACCGGAGAAAGTGGCACCGGTAAAGAGGTGTGTGCTGAAGC
CATTCATGCTGCCAGCCGACGAGGTGATAAACCGTTCATTGCCATTAACTGTGCCGCGATTCCGAAAGATCTGATTGAAA
GTGAGCTGTTCGGTCATGTCAAAGGTGCTTTTACGGGGGCCGCGACTGATCGGCAGGGTGCTGCCGAGCTTGCTGATGGC
GGGACGCTATTTCTGGATGAACTCTGTGAGATGGATTTGGACTTACAGACGAAATTATTGCGCTTTATCCAAACAGGTAC
ATTCCAGAAAGTCGGTTCATCAAAAATGAAAAGTGTTGATGTTCGCTTTGTGTGTGCAACAAACCGTGATCCGTGGAAAG
AAGTTCAGGAAGGACGTTTCCGGGAAGATTTGTACTATCGTTTATATGTTATCCCACTTCATTTGCCGCCACTTCGGGAA
CGGGGTGATGATGTCATTGAAATCGCTTACTCTTTACTCGGATATATGTCCAAAGAAGAAGAGAAAGATTTTGTTCGTCT
TGCTGCTGAAGTTGTGGAACGGTTCAGACAGTACGAGTGGCCGGGCAATGTTCGTCAGTTACAAAACGTTTTACGTAATG
TGGTTGTATTGAATCAGGGTAAAGAAATCACGCTGAGCATGTTACCACCGCCGTTGAATCAGCCGAAAGAAAGCTATCTT
CGTTTGGTTCAACCGATGATGGAAGATCGGAAACCTTCAGTCCATGAAATATTTCCCCTATGGATGACGGAAAAAATGGC
GATCGAAAATGCGATTGATGCATGTGAAGGCAATATCCCGAAAGCAGCTGGCTATTTAGAAGTAAGCCCTTCAACCATTT
ATCGTAAATTACAATCTTGGAATGCAGAAGAGAACGCATAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(14-122)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)

Bacterial regulatory protein, Fis family (HTH_8)

(420-458)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

87.248

95.923

0.837

Multiple sequence alignment