Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   OCU42_RS03380 Genome accession   NZ_AP024905
Coordinates   737489..738007 (+) Length   172 a.a.
NCBI ID   WP_077334784.1    Uniprot ID   A0A1R4LH54
Organism   Vibrio ruber strain LMG 23124     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 732489..743007
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU42_RS03370 - 732785..735628 (+) 2844 WP_077334780.1 pitrilysin family protein -
  OCU42_RS03375 gshA 735727..737331 (+) 1605 WP_077334782.1 glutamate--cysteine ligase -
  OCU42_RS03380 luxS 737489..738007 (+) 519 WP_077334784.1 S-ribosylhomocysteine lyase Regulator
  OCU42_RS03385 - 738101..739375 (-) 1275 WP_077334786.1 HlyC/CorC family transporter -
  OCU42_RS03390 - 739460..740254 (-) 795 WP_077334898.1 inner membrane protein YpjD -
  OCU42_RS03395 ffh 740508..741878 (+) 1371 WP_077334788.1 signal recognition particle protein -
  OCU42_RS03400 rpsP 742055..742303 (+) 249 WP_074371838.1 30S ribosomal protein S16 -
  OCU42_RS03405 rimM 742326..742880 (+) 555 WP_077334790.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18869.62 Da        Isoelectric Point: 4.5544

>NTDB_id=89341 OCU42_RS03380 WP_077334784.1 737489..738007(+) (luxS) [Vibrio ruber strain LMG 23124]
MPLLDSFTVDHTRMNAPAVRVAKTMNTPKGDTITVFDLRFTVPNQDILSEKGIHTLEHLFAGFMRAHLNGDGVEIIDISP
MGCRTGFYMSLIGVPSEQRVADAWLAAMQDVLKVEDQNKIPELNIYQCGTAAMHSLGEAKEIAQTVIASGISVNQNDDLA
LPESMLQELKVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=89341 OCU42_RS03380 WP_077334784.1 737489..738007(+) (luxS) [Vibrio ruber strain LMG 23124]
ATGCCATTATTAGATAGTTTTACAGTGGATCATACACGGATGAATGCACCAGCCGTTCGTGTTGCTAAAACCATGAATAC
CCCCAAAGGGGATACGATCACGGTGTTTGATTTACGCTTTACTGTCCCGAATCAAGATATCCTTTCAGAGAAAGGTATTC
ATACACTCGAGCACTTATTTGCAGGCTTTATGAGAGCGCATCTCAATGGTGACGGTGTTGAAATCATCGATATCTCTCCT
ATGGGGTGCCGGACAGGTTTTTACATGAGCTTGATCGGTGTACCTTCTGAGCAGCGAGTTGCGGATGCCTGGCTGGCAGC
AATGCAGGATGTTTTGAAGGTTGAAGACCAGAACAAAATCCCAGAATTAAACATTTATCAATGCGGCACCGCAGCCATGC
ACTCTTTGGGTGAAGCGAAAGAGATTGCCCAAACGGTTATTGCAAGTGGTATTAGCGTCAATCAGAACGATGATCTGGCG
CTACCTGAATCGATGCTTCAGGAACTGAAAGTAGATTGA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1R4LH54

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

85.965

99.419

0.855

Multiple sequence alignment