Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   R2R35_RS06750 Genome accession   NZ_CP136910
Coordinates   1696021..1697388 (-) Length   455 a.a.
NCBI ID   WP_317733740.1    Uniprot ID   -
Organism   Anaerocolumna sp. AGMB13020     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1691021..1702388
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R2R35_RS06725 (R2R35_06725) - 1691688..1691942 (-) 255 WP_317733736.1 phage holin family protein -
  R2R35_RS06730 (R2R35_06730) - 1692429..1693868 (-) 1440 WP_317733737.1 MFS transporter -
  R2R35_RS06735 (R2R35_06735) - 1694160..1694699 (-) 540 WP_317733738.1 rubrerythrin family protein -
  R2R35_RS06740 (R2R35_06740) - 1694864..1695016 (+) 153 WP_197032632.1 hypothetical protein -
  R2R35_RS06745 (R2R35_06745) - 1695221..1695928 (-) 708 WP_317733739.1 methyl-accepting chemotaxis protein -
  R2R35_RS06750 (R2R35_06750) radA 1696021..1697388 (-) 1368 WP_317733740.1 DNA repair protein RadA Machinery gene
  R2R35_RS06755 (R2R35_06755) - 1697556..1697972 (-) 417 WP_317733741.1 endosialidase -
  R2R35_RS06760 (R2R35_06760) - 1698147..1700591 (-) 2445 WP_317733742.1 ATP-dependent Clp protease ATP-binding subunit -
  R2R35_RS06765 (R2R35_06765) - 1700874..1701908 (-) 1035 WP_317733743.1 protein arginine kinase -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49782.66 Da        Isoelectric Point: 6.7421

>NTDB_id=893403 R2R35_RS06750 WP_317733740.1 1696021..1697388(-) (radA) [Anaerocolumna sp. AGMB13020]
MAKSKNVFFCTECGYESSKWMGQCPACKTWDTFAEEPPLKKGEKSRSTGILTEPQLLSAVSATENNRVTTGLQEMDRVLG
GGIVVGSLVLVGGDPGIGKSTLLLQICKELTDKQHRVLYISGEESLHQIKMRADRLGIFKGELLLLSETNLDNIEVIINK
NKPEIVIIDSIQTMYKEEIGAAPGSVSQVRETTSVLMHMAKGLNISIFIVGHVTKEGVVAGPRVLEHMVDTVLYFEGENK
ASYRILRGVKNRFGSTNEIGVFEMMDQGLREVTNPSEYMLQGKPEDEPGSVVAASMEGTRPILVEVQALVCQTNFNMPRR
TAAGTDYNRVNLLMAVLEKRIGLQMASMDAYVNVAGGMRINEPALDLGIVLAILSSYRNLALDSHTICFGEIGLTGEVRG
VSMADQRVAEAEKMGFKVCILPKTNADSIKKTSMKLIGVKNIRELNRLFSQGSSL

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=893403 R2R35_RS06750 WP_317733740.1 1696021..1697388(-) (radA) [Anaerocolumna sp. AGMB13020]
ATGGCCAAATCAAAGAATGTATTCTTTTGTACGGAATGCGGATATGAGAGTTCAAAATGGATGGGACAGTGCCCTGCCTG
CAAGACCTGGGATACTTTTGCAGAAGAACCGCCATTAAAGAAAGGTGAAAAAAGCAGAAGTACCGGAATTCTTACGGAAC
CTCAGCTGTTATCCGCTGTAAGCGCAACGGAAAATAACAGGGTGACAACAGGACTGCAGGAAATGGACAGAGTTTTAGGC
GGGGGTATCGTAGTCGGCTCTTTGGTACTGGTAGGAGGAGACCCCGGAATAGGAAAATCTACCCTGCTACTTCAGATTTG
TAAAGAATTAACCGATAAACAGCATAGAGTTTTGTATATATCAGGTGAGGAATCCCTTCATCAGATTAAGATGAGGGCAG
ACAGGCTTGGTATATTTAAAGGAGAATTACTTCTCTTAAGCGAGACGAATCTTGACAATATTGAAGTAATCATAAATAAA
AATAAACCTGAGATTGTAATTATCGATTCTATCCAGACCATGTATAAAGAAGAGATTGGTGCAGCACCGGGCAGTGTAAG
CCAGGTAAGAGAAACAACTAGTGTGCTGATGCATATGGCGAAAGGCCTTAATATATCAATATTTATTGTAGGTCATGTAA
CCAAAGAAGGAGTGGTAGCAGGCCCCAGAGTATTAGAGCATATGGTGGATACTGTGCTGTATTTTGAAGGAGAGAATAAA
GCTTCTTACAGAATTCTTCGTGGTGTAAAGAATCGATTTGGTTCAACCAATGAAATCGGTGTCTTTGAGATGATGGACCA
GGGACTCAGAGAGGTAACAAATCCTTCGGAATACATGCTTCAAGGAAAACCTGAGGATGAACCAGGCTCTGTAGTCGCAG
CTTCCATGGAGGGGACAAGACCTATACTGGTAGAAGTGCAGGCGTTAGTCTGCCAGACGAATTTTAATATGCCAAGACGT
ACGGCAGCAGGTACGGATTACAACAGGGTAAACCTCCTGATGGCAGTGCTTGAGAAAAGAATCGGGCTTCAGATGGCATC
CATGGATGCTTATGTCAATGTTGCCGGCGGAATGAGGATCAATGAACCTGCATTGGATTTGGGTATAGTTCTTGCCATAT
TATCAAGTTACCGCAATCTTGCTTTGGACAGTCATACCATCTGCTTTGGTGAGATTGGTCTTACCGGCGAAGTAAGAGGT
GTCAGTATGGCAGACCAAAGGGTGGCAGAAGCGGAAAAAATGGGCTTTAAGGTCTGTATCCTTCCTAAGACAAATGCTGA
TTCCATTAAAAAAACAAGCATGAAGCTGATTGGCGTAAAAAATATCAGAGAATTGAACAGGTTATTTTCACAGGGAAGCT
CCTTATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(62-217)

Subunit ChlI of Mg-chelatase (ChlI)

(339-425)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

55.85

99.56

0.556
  radA Streptococcus pneumoniae Rx1

51.762

99.78

0.516
  radA Streptococcus pneumoniae D39

51.762

99.78

0.516
  radA Streptococcus pneumoniae R6

51.762

99.78

0.516
  radA Streptococcus pneumoniae TIGR4

51.762

99.78

0.516
  radA Streptococcus mitis SK321

51.762

99.78

0.516
  radA Streptococcus mitis NCTC 12261

51.762

99.78

0.516