Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   R2R35_RS04265 Genome accession   NZ_CP136910
Coordinates   1015130..1016890 (-) Length   586 a.a.
NCBI ID   WP_317733254.1    Uniprot ID   -
Organism   Anaerocolumna sp. AGMB13020     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1010130..1021890
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R2R35_RS04245 (R2R35_04245) ribE 1010595..1011062 (+) 468 WP_317733250.1 6,7-dimethyl-8-ribityllumazine synthase -
  R2R35_RS04250 (R2R35_04250) - 1011195..1011470 (+) 276 WP_331670285.1 DUF2089 family protein -
  R2R35_RS04255 (R2R35_04255) - 1011777..1012736 (-) 960 WP_317733252.1 acetylxylan esterase -
  R2R35_RS04260 (R2R35_04260) rcrQ 1013329..1015137 (-) 1809 WP_317733253.1 ABC transporter ATP-binding protein Regulator
  R2R35_RS04265 (R2R35_04265) rcrP 1015130..1016890 (-) 1761 WP_317733254.1 ABC transporter ATP-binding protein Regulator
  R2R35_RS04270 (R2R35_04270) - 1016911..1019712 (-) 2802 WP_317733255.1 ABC transporter ATP-binding protein/permease -
  R2R35_RS04275 (R2R35_04275) - 1019982..1020659 (+) 678 WP_317733256.1 response regulator transcription factor -
  R2R35_RS04280 (R2R35_04280) - 1020652..1021692 (+) 1041 WP_317733257.1 HAMP domain-containing sensor histidine kinase -

Sequence

Protein


Download         Length: 586 a.a.        Molecular weight: 65079.84 Da        Isoelectric Point: 8.8048

>NTDB_id=893400 R2R35_RS04265 WP_317733254.1 1015130..1016890(-) (rcrP) [Anaerocolumna sp. AGMB13020]
MIKILKYFKKIEWLQVALCLVFITGQVWLDLKLPDYMSEITLLVQTEGSSMSEIWSAGGYMLLCALGSLVASIIIGYFAA
RLAATLSYRLRMGLYNRVEAFSMEEIGRFSTSSLITRSTNDITQVQTLIAMGLQVMIKAPILAVWAIIKIAGKSWQWSVS
TGGAVFALVILVTVLVVFALPKFKIVQQLTDNLNRVTRENLTGVRVVRAYNAENYQETKFKKANEEMTETNLFTNRIMAI
MMPGMSLIMNGLTLSIYWIGAYLINGADIPDRLSLFSDMVVYSSYAMQVVMAFMMLVMIFIMLPRSAVSARRINEVLDTQ
PKITDGDMDSKPWGMGEVEFKNVSFQYPGAAEYVLKDVSFKAKSGETVAFIGSTGSGKSTLINLIPRFYDATEGQVLIDG
VDIKKYKQKDLHNKIGYVPQRAVIFSGDIAGNVAFGNNGRKKAMKEDIENAASVAQAKDFIDNLPEKYQAPISQGGSNLS
GGQKQRLAIARAICRQPEIFIFDDSFSALDYKTDKVLRTQLAAQTLGATTFIVAQRIGTIRNADRIIVLEEGNVVGIGKH
EELLKTCKVYHEIAYSQLSKEELGDE

Nucleotide


Download         Length: 1761 bp        

>NTDB_id=893400 R2R35_RS04265 WP_317733254.1 1015130..1016890(-) (rcrP) [Anaerocolumna sp. AGMB13020]
ATGATAAAAATATTAAAGTATTTTAAAAAGATAGAATGGCTTCAGGTCGCCCTCTGTCTGGTATTTATAACAGGTCAGGT
CTGGCTCGACTTAAAACTGCCGGATTATATGTCTGAAATTACCTTGCTGGTGCAGACAGAAGGAAGTTCCATGTCAGAAA
TCTGGAGTGCCGGAGGGTATATGCTCCTTTGTGCTCTGGGCAGTTTAGTTGCTTCCATCATAATCGGCTATTTCGCTGCC
CGCCTTGCAGCAACTCTGTCCTACAGGCTGAGAATGGGGTTATACAACAGGGTTGAAGCCTTCTCCATGGAGGAAATCGG
ACGATTTTCCACATCAAGTTTAATTACTCGCTCCACGAATGATATAACCCAGGTACAGACTCTTATAGCAATGGGGCTTC
AGGTAATGATCAAAGCGCCGATCCTGGCGGTATGGGCAATCATAAAGATAGCGGGCAAAAGCTGGCAATGGTCTGTTTCG
ACGGGAGGAGCTGTTTTTGCATTAGTTATATTAGTTACGGTATTGGTTGTATTTGCGCTTCCCAAATTCAAGATTGTACA
ACAGTTAACAGATAATCTTAATCGTGTGACCAGAGAAAACCTAACTGGTGTCAGGGTTGTACGTGCCTATAATGCAGAAA
ACTATCAGGAAACGAAATTTAAAAAAGCAAATGAGGAAATGACAGAGACCAATCTGTTTACGAATCGCATTATGGCAATT
ATGATGCCTGGAATGTCTCTTATTATGAATGGACTTACACTGTCAATTTACTGGATTGGAGCCTATTTGATCAATGGTGC
CGATATACCGGACAGATTGTCTCTGTTTTCCGATATGGTAGTGTATTCGTCTTATGCCATGCAGGTTGTTATGGCGTTTA
TGATGCTGGTAATGATATTTATCATGCTGCCCCGTTCAGCAGTATCAGCCAGGCGTATCAACGAAGTACTGGATACACAG
CCCAAAATTACAGATGGAGATATGGACAGTAAACCCTGGGGAATGGGAGAAGTAGAATTTAAGAATGTAAGCTTTCAATA
TCCGGGAGCTGCGGAATATGTGCTTAAAGATGTTTCATTTAAAGCCAAGTCAGGTGAGACGGTTGCCTTTATCGGATCTA
CCGGAAGTGGAAAGAGTACACTGATTAATCTTATACCACGCTTTTACGATGCCACGGAAGGACAGGTACTCATTGATGGA
GTGGATATTAAGAAATACAAGCAAAAAGACCTTCATAATAAGATTGGTTATGTACCACAGAGAGCTGTTATTTTCTCAGG
CGATATTGCCGGGAATGTAGCTTTTGGCAATAACGGAAGGAAAAAAGCCATGAAAGAGGATATTGAAAATGCAGCATCAG
TAGCCCAGGCAAAGGATTTTATCGATAATCTTCCCGAAAAGTACCAGGCACCCATATCCCAGGGAGGTTCAAACCTCTCC
GGTGGTCAAAAGCAGCGTCTGGCAATTGCCAGGGCAATCTGCAGGCAGCCGGAAATCTTTATCTTCGATGATTCCTTTTC
CGCGCTGGATTATAAGACGGATAAGGTACTCCGCACACAGCTGGCAGCTCAAACCCTTGGTGCTACTACGTTTATTGTAG
CACAGCGTATCGGTACTATTCGAAATGCAGACCGTATTATAGTGCTGGAGGAAGGAAATGTTGTGGGGATCGGCAAACAC
GAAGAGCTGCTTAAGACTTGTAAGGTTTACCATGAGATTGCCTATTCACAATTATCAAAGGAGGAACTTGGAGATGAGTA
A

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(58-293)

ABC transporter (ABC_tran)

(355-505)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

54

100

0.553