Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   R1T12_RS26210 Genome accession   NZ_CP136909
Coordinates   5589202..5589759 (+) Length   185 a.a.
NCBI ID   WP_019486632.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa PA103     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5584202..5594759
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R1T12_RS26190 (R1T12_26190) pilR 5585478..5586815 (+) 1338 WP_003110427.1 two-component system response regulator PilR Regulator
  R1T12_RS26195 (R1T12_26195) thiO 5586861..5587955 (-) 1095 WP_023094393.1 glycine oxidase ThiO -
  R1T12_RS26200 (R1T12_26200) - 5588090..5588599 (+) 510 WP_019486634.1 Tfp pilus assembly protein FimT/FimU -
  R1T12_RS26205 (R1T12_26205) - 5588705..5589211 (+) 507 WP_019486633.1 Tfp pilus assembly protein FimT/FimU -
  R1T12_RS26210 (R1T12_26210) pilV 5589202..5589759 (+) 558 WP_019486632.1 type 4a pilus minor pilin PilV Machinery gene
  R1T12_RS26215 (R1T12_26215) pilW 5589756..5590580 (+) 825 WP_023094394.1 type 4a pilus minor pilin PilW -
  R1T12_RS26220 (R1T12_26220) pilX 5590577..5591164 (+) 588 WP_003094700.1 type 4a pilus minor pilin PilX -
  R1T12_RS26225 (R1T12_26225) pilY1 5591176..5594661 (+) 3486 WP_019486630.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20086.26 Da        Isoelectric Point: 7.9204

>NTDB_id=893389 R1T12_RS26210 WP_019486632.1 5589202..5589759(+) (pilV) [Pseudomonas aeruginosa PA103]
MLLKSRHKPLYQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPTSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLMSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=893389 R1T12_RS26210 WP_019486632.1 5589202..5589759(+) (pilV) [Pseudomonas aeruginosa PA103]
ATGCTATTGAAATCGCGGCACAAGCCGCTGTACCAGTCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGAATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGACCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGATGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTGGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(12-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

97.838

100

0.978