Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OCU42_RS03180 Genome accession   NZ_AP024905
Coordinates   690826..691812 (+) Length   328 a.a.
NCBI ID   WP_077334717.1    Uniprot ID   A0A1R4LGP3
Organism   Vibrio ruber strain LMG 23124     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 685826..696812
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU42_RS03145 ftsB 685860..686141 (+) 282 WP_077334703.1 cell division protein FtsB -
  OCU42_RS03150 ispD 686142..686837 (+) 696 WP_077334705.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  OCU42_RS03155 ispF 686858..687331 (+) 474 WP_077334707.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  OCU42_RS03160 truD 687411..688457 (+) 1047 WP_077334709.1 tRNA pseudouridine(13) synthase TruD -
  OCU42_RS03165 surE 688461..689201 (+) 741 WP_077334711.1 5'/3'-nucleotidase SurE -
  OCU42_RS03170 - 689207..689833 (+) 627 WP_077334713.1 protein-L-isoaspartate(D-aspartate) O-methyltransferase -
  OCU42_RS03175 - 689836..690744 (+) 909 WP_077334715.1 peptidoglycan DD-metalloendopeptidase family protein -
  OCU42_RS03180 rpoS 690826..691812 (+) 987 WP_077334717.1 RNA polymerase sigma factor RpoS Regulator
  OCU42_RS03185 - 691906..692955 (-) 1050 WP_205409434.1 pectate lyase -
  OCU42_RS03190 - 693308..695365 (-) 2058 WP_077334721.1 ATP-binding protein -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 37674.52 Da        Isoelectric Point: 4.6105

>NTDB_id=89338 OCU42_RS03180 WP_077334717.1 690826..691812(+) (rpoS) [Vibrio ruber strain LMG 23124]
MSKSNSVTKVDQFDFDSEAFDLNPLGNEVSSDSVSVETREEYEVTSKSLDATQLYLGEIGFSPLLTAEEEILYARRALRG
DEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIR
LPIHVVKELNIYLRTARELSQKLDHEPTAEDIALELDKSVDDVSKMLRLNERISSVDTPIGGDGDKALLDIIPDAKHYDP
EYSTEDDDIKSSLLHWLDELNPKQKEVLARRFGLLGYEPSTLEEVGKEINLTRERVRQIQVEGLRRLREILLKQGLNMES
LFDVESDE

Nucleotide


Download         Length: 987 bp        

>NTDB_id=89338 OCU42_RS03180 WP_077334717.1 690826..691812(+) (rpoS) [Vibrio ruber strain LMG 23124]
ATGAGTAAAAGCAATTCAGTAACTAAGGTCGATCAATTTGATTTTGATTCAGAAGCATTTGATCTCAATCCATTGGGTAA
TGAGGTCAGTTCTGATTCTGTATCCGTCGAAACTCGGGAAGAGTATGAAGTTACTTCCAAGAGCTTAGACGCGACTCAAC
TCTATTTAGGCGAAATCGGTTTTTCTCCTTTGTTAACCGCAGAGGAAGAAATCTTGTACGCACGCCGGGCTCTCCGGGGT
GATGAAGCCGCTCGTAAACGGATGATTGAGAGTAATCTACGTCTCGTTGTCAAAATATCTCGCCGATATAGTAACCGTGG
TCTGGCTTTGCTGGATCTGATCGAAGAAGGTAACCTCGGGTTGATTCGGGCCGTTGAAAAGTTTGATCCTGAAAGAGGAT
TTCGCTTTTCTACGTATGCAACTTGGTGGATCCGACAAACGATTGAACGGGCGTTGATGAATCAAACCAGAACGATTCGT
TTACCTATTCACGTTGTCAAAGAACTTAATATTTATCTACGTACAGCACGTGAGTTGTCACAGAAGTTAGACCATGAACC
AACAGCGGAAGATATTGCACTTGAGCTGGATAAATCGGTTGATGATGTCAGTAAGATGCTCCGGCTGAACGAACGTATTA
GTTCTGTTGATACGCCTATTGGTGGTGATGGTGATAAAGCATTACTGGATATCATTCCAGATGCGAAACACTATGATCCA
GAATATTCGACAGAAGATGATGATATCAAGTCTTCGCTCTTACATTGGCTAGATGAACTGAATCCGAAACAAAAAGAAGT
GTTGGCAAGACGTTTTGGTTTGCTCGGATATGAACCATCGACTTTGGAAGAAGTAGGAAAAGAGATCAATTTAACACGTG
AGCGAGTTCGTCAAATCCAAGTCGAAGGGCTGCGTCGTTTGAGAGAAATTCTACTGAAACAAGGCTTGAACATGGAGTCT
TTGTTTGATGTAGAGAGTGATGAATAA

Domains

Predicted by InterproScan.

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(50-83)

Sigma-70, region 4 (Sigma70_r4)

(256-309)

Sigma-70 region 3 (Sigma70_r3)

(168-242)

Sigma-70 region 2 (Sigma70_r2)

(88-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1R4LGP3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

83.533

100

0.851

Multiple sequence alignment