Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   R1T29_RS22200 Genome accession   NZ_CP136904
Coordinates   1406200..1407297 (-) Length   365 a.a.
NCBI ID   WP_005463467.1    Uniprot ID   Q87GU4
Organism   Vibrio parahaemolyticus strain X1     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 1401200..1412297
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R1T29_RS22185 (R1T29_22185) - 1401863..1402918 (-) 1056 WP_274055986.1 HlyD family secretion protein -
  R1T29_RS22190 (R1T29_22190) - 1402957..1403412 (-) 456 WP_005477342.1 MarR family transcriptional regulator -
  R1T29_RS22195 (R1T29_22195) luxQ 1403624..1406200 (-) 2577 WP_005463469.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  R1T29_RS22200 (R1T29_22200) luxP 1406200..1407297 (-) 1098 WP_005463467.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  R1T29_RS22205 (R1T29_22205) - 1407648..1407968 (-) 321 WP_229619491.1 GIY-YIG nuclease family protein -
  R1T29_RS22210 (R1T29_22210) - 1407965..1408615 (-) 651 WP_017447360.1 YceH family protein -
  R1T29_RS22215 (R1T29_22215) - 1408792..1409007 (-) 216 WP_005477197.1 hypothetical protein -
  R1T29_RS22220 (R1T29_22220) - 1409334..1409648 (+) 315 WP_005453573.1 DUF496 family protein -
  R1T29_RS22225 (R1T29_22225) - 1409771..1411108 (+) 1338 WP_025521024.1 MATE family efflux transporter -
  R1T29_RS22230 (R1T29_22230) - 1411182..1412159 (-) 978 WP_025794228.1 Gfo/Idh/MocA family protein -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41339.67 Da        Isoelectric Point: 5.0568

>NTDB_id=893319 R1T29_RS22200 WP_005463467.1 1406200..1407297(-) (luxP) [Vibrio parahaemolyticus strain X1]
MNKALVLSLISIAGMSPASQASQVLNGYWAYQEFLNEFPEQKHLTDALAAAVRDDPVPIAPEKRHPLKISVVYPGQQISD
YWIRNIDAFEKRLDKLNIDYQINQVFTRPNADIKQQSLSLMEALKSNSDYLIFTLDTTRHRKFVEHVLDSTKTKLILQNI
TTPVREWETRQPFMYVGFDHAEGSRELAVEFGKQFPKNTHYSVLYFSEGYISDIRGNTFIHQVNQDSQFELQSAYYTKAT
KQSGYEAAKASLKKYPDVEFIYACSTDVALGAVEALSELGREDVMINGWGGGSAELDAILKGELDITVMRMNDDTGIAMA
EAIKWDLEGKPVPTVYSGDFEVVTKSDSPERIEALRKRAFRYSDN

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=893319 R1T29_RS22200 WP_005463467.1 1406200..1407297(-) (luxP) [Vibrio parahaemolyticus strain X1]
ATGAATAAAGCGTTAGTATTGTCCCTGATTTCAATTGCCGGCATGTCTCCGGCTTCACAAGCCTCTCAGGTTCTTAACGG
CTACTGGGCGTATCAAGAATTCTTAAATGAATTCCCAGAACAGAAACACTTAACGGATGCTCTGGCTGCGGCCGTGAGAG
ACGATCCTGTACCTATTGCCCCTGAAAAAAGACACCCATTAAAAATCTCCGTTGTTTATCCAGGGCAGCAGATTTCTGAT
TACTGGATAAGAAACATCGACGCGTTTGAGAAGCGCTTAGATAAACTCAATATTGATTACCAAATCAATCAAGTGTTTAC
GCGCCCGAACGCCGATATCAAACAACAAAGCCTTTCTTTGATGGAAGCACTAAAAAGCAATTCCGACTACTTAATTTTTA
CACTCGATACGACCAGACATCGTAAGTTTGTCGAACATGTTTTAGATTCCACCAAAACCAAACTTATCCTGCAAAATATC
ACGACGCCAGTTCGTGAATGGGAAACTCGACAGCCTTTTATGTACGTCGGTTTCGATCACGCTGAAGGCAGTCGCGAACT
CGCTGTAGAGTTTGGCAAGCAGTTCCCAAAAAATACCCATTACAGTGTTTTGTACTTCTCTGAAGGCTACATTAGCGATA
TCCGTGGTAACACATTCATTCACCAAGTGAACCAAGACAGTCAGTTTGAACTACAATCTGCTTACTATACAAAAGCGACA
AAACAGTCCGGGTATGAAGCTGCAAAAGCGAGCTTGAAAAAGTACCCAGATGTCGAGTTCATTTATGCTTGTTCTACCGA
CGTTGCGTTAGGTGCCGTCGAAGCACTGTCTGAACTTGGCCGTGAAGACGTTATGATTAATGGCTGGGGCGGTGGTTCTG
CTGAGCTAGACGCTATCTTAAAAGGGGAGTTAGATATCACCGTCATGCGTATGAATGATGATACTGGCATTGCTATGGCA
GAGGCGATTAAATGGGATTTGGAAGGTAAACCTGTACCAACGGTGTACTCTGGGGACTTCGAAGTTGTGACCAAATCAGA
TTCCCCTGAGCGAATTGAAGCTCTCAGAAAACGTGCATTTAGATACTCAGACAATTGA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87GU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

64.56

99.726

0.644