Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   R1T29_RS21245 Genome accession   NZ_CP136904
Coordinates   1172118..1173299 (+) Length   393 a.a.
NCBI ID   WP_203503167.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain X1     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1167118..1178299
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R1T29_RS21230 (R1T29_21230) - 1167384..1169612 (+) 2229 WP_203503380.1 M9 family metallopeptidase -
  R1T29_RS21235 (R1T29_21235) - 1169792..1170529 (+) 738 WP_025520389.1 EAL domain-containing protein -
  R1T29_RS21240 (R1T29_21240) ylqF 1170819..1171763 (+) 945 WP_005454328.1 ribosome biogenesis GTPase YlqF -
  R1T29_RS21245 (R1T29_21245) cqsA 1172118..1173299 (+) 1182 WP_203503167.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  R1T29_RS21250 (R1T29_21250) cqsS 1173377..1175425 (-) 2049 WP_086482789.1 response regulator Regulator
  R1T29_RS21255 (R1T29_21255) - 1175745..1176362 (+) 618 WP_047725151.1 HAD family phosphatase -
  R1T29_RS21260 (R1T29_21260) - 1176449..1176997 (-) 549 WP_031827588.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43800.12 Da        Isoelectric Point: 6.6123

>NTDB_id=893317 R1T29_RS21245 WP_203503167.1 1172118..1173299(+) (cqsA) [Vibrio parahaemolyticus strain X1]
MCTKNETKPLPSFIEERLNFHIQDLIKSNENQKHLVLGKRPSENAVVMQSNDYLSLSHNELIQKAHRDAISERDDNVVMS
AIFLQDDQSKPAFEHQLATFVGMESCLLSQSGWAANIGLLQTICAPNVPVYIDFFAHMSLWEGARTAGAQIHPFMHNNMN
HLRKQIQRHGAGIIVVDSVYSTIGTIAPLRAIYEMAKEFDCGLVVDESHSFGTHGPKGSGLLQELGLTQMVDFVTVSLAK
TFAYRAGAILGPNKLAQSLPFVAYPAIFSSTVLPQEVVRLEKTLEVIKAADDKRECLFKRAKELAIGLKRIGFNIRSESQ
IIALECGSERNTERVRDFLEERGVFGAVFCRPATGRNKNIIRFSVNADMTAQQVDHVLSACQEAFDHPDLEFV

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=893317 R1T29_RS21245 WP_203503167.1 1172118..1173299(+) (cqsA) [Vibrio parahaemolyticus strain X1]
ATGTGTACTAAAAACGAAACTAAACCACTGCCCTCTTTTATCGAGGAACGCCTTAATTTCCATATTCAAGATTTAATTAA
ATCTAACGAAAATCAAAAACACCTCGTTCTTGGCAAACGACCGTCCGAAAATGCCGTGGTAATGCAAAGCAATGATTACC
TTTCGCTCTCTCACAATGAGCTCATTCAGAAAGCGCATCGAGATGCAATTTCTGAACGAGATGACAATGTCGTGATGTCG
GCAATCTTCTTACAAGATGACCAATCAAAACCCGCCTTTGAGCACCAGCTGGCGACGTTTGTCGGCATGGAAAGTTGTTT
GTTGTCACAATCAGGATGGGCAGCCAATATTGGTTTACTGCAAACCATCTGCGCGCCAAACGTTCCCGTATACATCGACT
TTTTCGCTCATATGTCGTTGTGGGAAGGAGCACGCACCGCTGGAGCGCAGATTCATCCTTTCATGCATAACAACATGAAT
CATCTGCGCAAGCAGATCCAACGCCACGGTGCGGGAATCATCGTTGTCGATTCGGTGTATAGCACGATTGGCACAATCGC
CCCGTTACGTGCCATCTACGAAATGGCGAAGGAGTTCGATTGTGGCTTAGTGGTAGATGAATCCCATTCATTCGGCACGC
ACGGACCAAAGGGTTCTGGATTATTACAAGAACTGGGACTAACACAGATGGTGGATTTCGTTACCGTAAGTTTGGCTAAA
ACGTTCGCCTACCGCGCTGGTGCGATATTAGGCCCGAACAAGCTAGCACAATCGCTGCCCTTCGTGGCCTATCCTGCGAT
TTTTAGCTCAACGGTTTTGCCGCAAGAAGTCGTGCGTCTAGAAAAAACACTTGAGGTAATTAAAGCGGCTGACGACAAAC
GTGAATGTTTGTTCAAGCGAGCCAAAGAACTCGCGATCGGATTAAAACGTATTGGGTTTAACATTCGCAGCGAATCGCAG
ATTATTGCTCTTGAATGTGGAAGTGAGAGAAACACTGAACGAGTACGAGACTTTCTTGAAGAAAGAGGCGTTTTCGGTGC
GGTGTTTTGCCGACCTGCCACGGGCAGAAACAAGAACATCATTCGATTTTCTGTCAATGCCGACATGACAGCTCAACAAG
TGGATCACGTCTTATCGGCTTGTCAGGAGGCATTTGACCATCCCGACTTAGAGTTTGTGTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(45-379)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

58.656

98.473

0.578