Detailed information NTG0893308

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: R1T29_RS14690
• Genome accession: NZ_CP136903
• Coordinates: 3167356..3168402 (+)
• Length: 348 a.a.
• NCBI ID: WP_254894148.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain X1
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 3162356..3173402

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R1T29_RS14670 (R1T29_14670)	rplC	3162929..3163558 (-)	630	WP_005456132.1	50S ribosomal protein L3	-
R1T29_RS14675 (R1T29_14675)	rpsJ	3163573..3163884 (-)	312	WP_004410492.1	30S ribosomal protein S10	-
R1T29_RS14680 (R1T29_14680)	rpmE	3164342..3164563 (-)	222	WP_005457203.1	50S ribosomal protein L31	-
R1T29_RS14685 (R1T29_14685)	priA	3164858..3167062 (+)	2205	WP_317675969.1	primosomal protein N'	-
R1T29_RS14690 (R1T29_14690)	cytR	3167356..3168402 (+)	1047	WP_254894148.1	DNA-binding transcriptional regulator CytR	Regulator
R1T29_RS14695 (R1T29_14695)	ftsN	3168578..3169123 (+)	546	WP_317675971.1	cell division protein FtsN	-
R1T29_RS14700 (R1T29_14700)	hslV	3169288..3169839 (+)	552	WP_005489705.1	ATP-dependent protease subunit HslV	-
R1T29_RS14705 (R1T29_14705)	hslU	3169863..3171194 (+)	1332	WP_317675972.1	HslU--HslV peptidase ATPase subunit	-
R1T29_RS14710 (R1T29_14710)	-	3171379..3172296 (+)	918	WP_005457195.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
R1T29_RS14715 (R1T29_14715)	rraA	3172373..3172885 (+)	513	WP_005457192.1	ribonuclease E activity regulator RraA	-
R1T29_RS14720 (R1T29_14720)	zapB	3172990..3173232 (-)	243	WP_005481417.1	cell division protein ZapB	-

Sequence

Protein

• Length: 348 a.a.
• Molecular weight: 38445.17 Da
• Isoelectric Point: 6.7430

>NTDB_id=893308 R1T29_RS14690 WP_254894148.1 3167356..3168402(+) (cytR) [Vibrio parahaemolyticus strain X1]
MTSSWQKFERLNTMATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVP
DICDPYFSEIIRGIEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEF
APELELPTVHIDNLTSAFEAVNYLTQLGHKRIAQISGPDTAVLCQFRQQGYQQALRRAGISKDPQYSVITEFSFDGGAKA
VRKLLELPEPPTAIFCHCDTMAIGAIQEAKRLGLRVPQDLSVVGFDDINFAQYCDPPLTTISQPRYEIGRQAMLMMLELL
KGHDVHSGSRLLETKLVVRGSAAPPQRA

Nucleotide

• Length: 1047 bp

>NTDB_id=893308 R1T29_RS14690 WP_254894148.1 3167356..3168402(+) (cytR) [Vibrio parahaemolyticus strain X1]
ATAACGTCATCTTGGCAAAAATTTGAGAGGTTAAACACTATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTGTC
GACAGCTACGGTATCTCGAGCATTAATGAATCCAGAAAAAGTCTCTTCTTCAACAAGAAAAAGAGTCGAAGATGCCGTGC
TTGAAGCGGGCTATTCTCCAAATTCATTAGCGCGTAATCTACGTAGAAACGAATCAAAAACGATTGTTACCATCGTTCCT
GACATCTGTGATCCTTACTTTTCTGAAATCATTCGTGGTATCGAAGACGCCGCTATGGAACATGGCTACCTCGTACTGCT
CGGTGACAGCGGCCAGCAGAAAAAGCGTGAAAGCTCATTTGTGAATCTAGTGTTCACCAAACAAGCCGATGGCATGTTAC
TGCTTGGCACCGACCTGCCATTTGATGTCAGCAAGCCAGAACAGAAAAACCTGCCACCAATGGTCATGGCTTGTGAGTTT
GCGCCAGAGCTAGAATTACCAACCGTACATATTGACAACCTAACGTCTGCTTTTGAAGCGGTCAATTACCTAACTCAACT
TGGCCATAAACGCATAGCACAAATTTCAGGGCCAGACACAGCGGTATTGTGCCAGTTCCGCCAGCAAGGTTATCAACAAG
CCTTGCGTCGCGCGGGGATCAGTAAAGACCCACAATACAGCGTTATCACTGAGTTTTCTTTTGACGGCGGCGCGAAAGCT
GTACGTAAGTTGCTAGAACTTCCAGAGCCACCAACTGCGATTTTCTGCCACTGCGACACCATGGCAATCGGCGCAATCCA
AGAAGCGAAACGACTCGGTCTGCGCGTTCCGCAAGATCTGTCAGTGGTTGGTTTCGATGATATCAACTTTGCTCAATACT
GCGATCCACCGTTAACGACCATTTCTCAACCTCGTTATGAAATTGGCCGCCAAGCGATGCTTATGATGCTTGAACTACTT
AAAGGTCATGACGTTCATTCAGGTTCACGCTTACTAGAAACTAAGCTTGTTGTCCGTGGTAGCGCAGCGCCACCGCAACG
CGCCTAA

Domains

Predicted by InterproScan.

• Periplasmic binding protein-like domain (Peripla_BP_3) (181-341)

• Bacterial regulatory proteins, lacI family (LacI) (16-61)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	100	100	1
cytR	Vibrio cholerae C6706	90.719	95.977	0.871