Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   R1T29_RS03080 Genome accession   NZ_CP136903
Coordinates   628466..628984 (+) Length   172 a.a.
NCBI ID   WP_005462534.1    Uniprot ID   Q87LS4
Organism   Vibrio parahaemolyticus strain X1     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 623466..633984
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R1T29_RS03070 (R1T29_03070) gshA 626201..627769 (+) 1569 WP_015297257.1 glutamate--cysteine ligase -
  R1T29_RS03075 (R1T29_03075) - 627794..628399 (+) 606 WP_015297256.1 hypothetical protein -
  R1T29_RS03080 (R1T29_03080) luxS 628466..628984 (+) 519 WP_005462534.1 S-ribosylhomocysteine lyase Regulator
  R1T29_RS03085 (R1T29_03085) - 629045..630325 (-) 1281 WP_005462557.1 HlyC/CorC family transporter -
  R1T29_RS03090 (R1T29_03090) - 630451..631245 (-) 795 WP_203503819.1 inner membrane protein YpjD -
  R1T29_RS03095 (R1T29_03095) ffh 631458..632840 (+) 1383 WP_005462555.1 signal recognition particle protein -
  R1T29_RS03100 (R1T29_03100) rpsP 633050..633298 (+) 249 WP_005379962.1 30S ribosomal protein S16 -
  R1T29_RS03105 (R1T29_03105) rimM 633327..633875 (+) 549 WP_005462552.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19033.73 Da        Isoelectric Point: 4.7134

>NTDB_id=893289 R1T29_RS03080 WP_005462534.1 628466..628984(+) (luxS) [Vibrio parahaemolyticus strain X1]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWLASMEDVLKVESQNKIPELNEYQCGTAAMHSLEEAQQIAKNILAAGVSVNKNDELA
LPESMLKELRVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=893289 R1T29_RS03080 WP_005462534.1 628466..628984(+) (luxS) [Vibrio parahaemolyticus strain X1]
ATGCCTTTACTCGATAGCTTCACCGTAGACCACACTCGCATGAATGCACCAGCAGTGCGTGTCGCGAAAACCATGCAAAC
TCCAAAAGGAGATACCATTACGGTTTTCGACTTACGCTTCACTGCGCCTAACAAAGACATTCTTTCAGAGAAAGGCATTC
ATACACTAGAGCACTTGTACGCAGGTTTCATGCGCAATCACCTAAATGGTGACAGTGTGGAAATCATTGATATCTCCCCG
ATGGGATGTCGCACTGGTTTTTACATGAGTCTCATTGGTACGCCTTCTGAACAGCAAGTTGCAGACGCATGGCTTGCTTC
TATGGAAGATGTGCTAAAAGTGGAAAGCCAGAACAAAATCCCTGAGCTAAATGAGTACCAGTGTGGTACTGCAGCGATGC
ATTCTTTAGAAGAAGCACAGCAAATTGCCAAGAACATTCTAGCCGCAGGTGTGTCTGTTAATAAAAACGACGAGTTGGCT
TTGCCAGAATCAATGCTAAAAGAGCTGCGCGTAGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87LS4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

88.889

99.419

0.884