Detailed information NTG0893286

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: R1T29_RS02950
• Genome accession: NZ_CP136903
• Coordinates: 605881..606870 (+)
• Length: 329 a.a.
• NCBI ID: WP_005478537.1
• Uniprot ID: A8D8R0
• Organism: Vibrio parahaemolyticus strain X1
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 600881..611870

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R1T29_RS02915 (R1T29_02915)	ftsB	600889..601170 (+)	282	WP_005455577.1	cell division protein FtsB	-
R1T29_RS02920 (R1T29_02920)	ispD	601172..601876 (+)	705	WP_005455574.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
R1T29_RS02925 (R1T29_02925)	ispF	601894..602370 (+)	477	WP_203503810.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
R1T29_RS02930 (R1T29_02930)	truD	602417..603460 (+)	1044	WP_020835387.1	tRNA pseudouridine(13) synthase TruD	-
R1T29_RS02935 (R1T29_02935)	surE	603460..604236 (+)	777	WP_005493942.1	5'/3'-nucleotidase SurE	-
R1T29_RS02940 (R1T29_02940)	-	604236..604862 (+)	627	WP_005455562.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
R1T29_RS02945 (R1T29_02945)	-	604877..605800 (+)	924	WP_005455560.1	peptidoglycan DD-metalloendopeptidase family protein	-
R1T29_RS02950 (R1T29_02950)	rpoS	605881..606870 (+)	990	WP_005478537.1	RNA polymerase sigma factor RpoS	Regulator
R1T29_RS02955 (R1T29_02955)	mutS	606950..609511 (-)	2562	WP_042782299.1	DNA mismatch repair protein MutS	-
R1T29_RS02960 (R1T29_02960)	pncC	609596..610078 (+)	483	WP_017449151.1	nicotinamide-nucleotide amidase	-
R1T29_RS02965 (R1T29_02965)	recA	610279..611322 (+)	1044	WP_005478550.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37560.38 Da
• Isoelectric Point: 4.6096

>NTDB_id=893286 R1T29_RS02950 WP_005478537.1 605881..606870(+) (rpoS) [Vibrio parahaemolyticus strain X1]
MSISNTVSKVEEFEYDNASETTIDNELEKSSSTTEGKTAVREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNS
DPEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNM
ENLFNVEDD

Nucleotide

• Length: 990 bp

>NTDB_id=893286 R1T29_RS02950 WP_005478537.1 605881..606870(+) (rpoS) [Vibrio parahaemolyticus strain X1]
ATGAGTATCAGCAACACAGTATCCAAAGTTGAAGAGTTTGAATACGACAATGCGTCAGAGACGACCATTGATAACGAACT
CGAAAAATCATCATCTACTACCGAAGGCAAAACAGCTGTCCGTGAAGAGTTTGACGCGAGCAGTAAAAGCCTAGACGCAA
CTCAATTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTTACTGCTGAAGAAGAAGTCCTTTACGCCCGCAGAGCATTG
CGTGGTGATGAAGCGGCTCGTAAGCGCATGATCGAAAGTAACTTGCGTTTAGTAGTAAAAATTTCTCGTCGGTACAGCAA
CCGTGGCCTAGCGCTACTCGATCTTATTGAAGAAGGTAACCTCGGTTTGATCCGAGCGGTTGAAAAATTCGATCCAGAAA
GAGGCTTCCGTTTCTCAACTTACGCAACATGGTGGATCCGTCAAACGATCGAACGTGCGTTGATGAACCAAACTCGCACC
ATTCGCTTGCCTATTCATGTCGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCA
TGAACCAACTGCAGAAGAAATTGCTGCTCAATTAGATATACCAGTAGAAGATGTCAGCAAAATGCTGCGTCTTAACGAGC
GTATTAGCTCCGTTGATACCCCAATTGGTGGTGACGGTGAAAAAGCACTTCTGGATATTATTCCTGACGCAAATAACTCT
GATCCAGAAGTGTCGACTCAAGATGATGACATCAAATCGTCTTTGATCCATTGGTTGGAAGAGTTGAATCCAAAACAAAA
AGAAGTGCTTGCACGCCGTTTTGGTTTGCTTGGTTATGAGCCGTCTACGCTTGAAGAAGTGGGACGAGAGATTGGTCTTA
CCCGTGAGCGTGTACGTCAAATTCAAGTGGAGGGTTTACGTCGACTTCGTGAAATCCTAATTAAACAAGGCCTAAATATG
GAAAACTTGTTTAACGTTGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

• Sigma-70 region 3 (Sigma70_r3) (170-243)

3D structure

• AlphaFold DB: A8D8R0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.851