Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   R1T29_RS01745 Genome accession   NZ_CP136903
Coordinates   361504..362019 (+) Length   171 a.a.
NCBI ID   WP_025554074.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain X1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 356504..367019
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R1T29_RS01725 (R1T29_01725) - 356637..359207 (-) 2571 WP_140265672.1 penicillin-binding protein 1A -
  R1T29_RS01730 (R1T29_01730) pilM 359350..360366 (+) 1017 WP_140067326.1 type IV pilus biogenesis protein PilM Machinery gene
  R1T29_RS01735 (R1T29_01735) pilN 360350..360928 (+) 579 WP_005480484.1 PilN domain-containing protein Machinery gene
  R1T29_RS01740 (R1T29_01740) pilO 360921..361514 (+) 594 WP_005480482.1 type 4a pilus biogenesis protein PilO Machinery gene
  R1T29_RS01745 (R1T29_01745) pilP 361504..362019 (+) 516 WP_025554074.1 pilus assembly protein PilP Machinery gene
  R1T29_RS01750 (R1T29_01750) pilQ 362051..363799 (+) 1749 WP_005488227.1 type IV pilus secretin PilQ Machinery gene
  R1T29_RS01755 (R1T29_01755) aroK 363988..364506 (+) 519 WP_005381319.1 shikimate kinase AroK -
  R1T29_RS01760 (R1T29_01760) aroB 364538..365638 (+) 1101 WP_023622897.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18958.18 Da        Isoelectric Point: 10.5314

>NTDB_id=893279 R1T29_RS01745 WP_025554074.1 361504..362019(+) (pilP) [Vibrio parahaemolyticus strain X1]
MRNKSLLMVLVSALLVGCQANDESLTDFIRGVESQARRDVEKLKPADKYIAVAYAPEVMRAPFELPKEATIATQPVARKD
CWQPPNRARSGKLEKFPLSQLRLKGVMGMGNTVSGLVQAPNGTVYKVKPGQYLGRNNGKVTHVTHSYLLINETLPDGLGC
WQKRKVKLALR

Nucleotide


Download         Length: 516 bp        

>NTDB_id=893279 R1T29_RS01745 WP_025554074.1 361504..362019(+) (pilP) [Vibrio parahaemolyticus strain X1]
ATGAGAAATAAATCTTTGCTGATGGTGTTGGTAAGCGCTCTATTGGTCGGGTGCCAGGCGAATGATGAATCATTAACGGA
TTTTATTCGTGGTGTTGAGAGTCAGGCGCGACGAGATGTGGAGAAGCTCAAACCTGCTGACAAATACATCGCAGTAGCGT
ATGCCCCAGAAGTGATGCGTGCTCCTTTCGAATTGCCCAAAGAGGCGACCATCGCGACTCAACCTGTGGCGAGAAAAGAT
TGTTGGCAACCGCCGAACCGAGCGAGATCTGGCAAGTTAGAAAAATTCCCACTCAGCCAACTTCGTTTAAAAGGAGTGAT
GGGTATGGGGAACACCGTTTCTGGTTTAGTACAAGCCCCGAATGGCACGGTTTACAAAGTGAAACCAGGTCAATACCTCG
GGCGTAATAACGGTAAGGTCACCCATGTTACCCACTCCTATTTGTTGATTAATGAAACCTTGCCCGATGGTTTGGGGTGC
TGGCAAAAACGTAAAGTTAAGTTGGCTTTGAGATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(25-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Vibrio campbellii strain DS40M4

84.211

100

0.842
  pilP Vibrio cholerae strain A1552

58.14

100

0.585