Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   OCV37_RS16480 Genome accession   NZ_AP024904
Coordinates   295038..296210 (+) Length   390 a.a.
NCBI ID   WP_038184149.1    Uniprot ID   -
Organism   Vibrio rhizosphaerae strain LMG 23790     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 290038..301210
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV37_RS16470 - 290420..291562 (+) 1143 WP_038184153.1 efflux RND transporter periplasmic adaptor subunit -
  OCV37_RS16475 - 291566..294631 (+) 3066 WP_038184151.1 efflux RND transporter permease subunit -
  OCV37_RS16480 cqsA 295038..296210 (+) 1173 WP_038184149.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  OCV37_RS16485 - 296270..297754 (-) 1485 WP_245609145.1 hybrid sensor histidine kinase/response regulator -
  OCV37_RS16490 - 298928..299752 (+) 825 WP_157635057.1 hypothetical protein -
  OCV37_RS16495 - 299820..300446 (+) 627 WP_038184140.1 hypothetical protein -
  OCV37_RS16500 - 300505..301203 (-) 699 WP_261888162.1 sulfite exporter TauE/SafE family protein -

Sequence

Protein


Download         Length: 390 a.a.        Molecular weight: 43835.32 Da        Isoelectric Point: 6.5592

>NTDB_id=89326 OCV37_RS16480 WP_038184149.1 295038..296210(+) (cqsA) [Vibrio rhizosphaerae strain LMG 23790]
MFNYPKSLPEFIKPRADFLMKDLIDTDFGKNLVVGITPTPQDIVMQSNDYLNISEHIDIREQLIKSLQQKKNDMFMSSIF
LHDDNHKHILETEISEYTGFSNSFLSQSGWSANVSLLQALCVPETNVYIDFFAHMSMWEGARYSNANIRPFMHNNCNHLK
KLIQRHGPGIIVVDSVYSTIGTVAPLEEIVAIAHEYHCVTVVDESHSLGVYGQNGAGILNELGLSQKVDFMTASLAKAFA
YRAGVICTNSDFGQCIPYAAFSNIFSSTMMSHEIPALKATLDVIKNADDRREKLFDLSKALRLGLKEIGLELRSQSHIIS
LETGDELNTKKIRVILEEQGIFGSVFCRPATPKNKNIIRFSINSSLSFEDVSKIIKVCGELMKDKSVYFK

Nucleotide


Download         Length: 1173 bp        

>NTDB_id=89326 OCV37_RS16480 WP_038184149.1 295038..296210(+) (cqsA) [Vibrio rhizosphaerae strain LMG 23790]
ATGTTTAACTATCCTAAGTCTTTACCTGAGTTTATTAAACCAAGAGCGGATTTTTTAATGAAAGATCTCATTGACACCGA
TTTTGGGAAAAACTTAGTTGTTGGGATAACGCCAACACCTCAAGATATTGTGATGCAGAGTAATGATTATTTAAATATAT
CTGAACATATAGATATACGAGAACAATTAATCAAATCACTACAACAGAAGAAAAATGATATGTTTATGTCATCAATATTT
CTACATGATGACAATCATAAGCACATATTAGAAACTGAGATATCAGAATACACCGGTTTTAGTAACTCTTTTCTCTCTCA
GTCTGGATGGAGTGCAAATGTCTCTTTATTACAAGCCCTTTGTGTACCGGAAACGAATGTATATATTGATTTTTTCGCGC
ATATGTCAATGTGGGAGGGCGCTCGCTATAGTAATGCGAACATTCGCCCATTTATGCATAACAACTGTAATCATTTGAAA
AAATTAATCCAACGTCATGGCCCCGGTATTATCGTAGTCGACTCTGTTTACAGCACGATTGGGACGGTAGCTCCTTTAGA
AGAAATTGTCGCAATTGCTCATGAGTATCATTGTGTGACCGTTGTTGATGAGTCTCATTCTTTGGGTGTTTATGGGCAGA
ATGGGGCAGGTATATTAAATGAGCTGGGGTTATCGCAAAAGGTTGACTTCATGACGGCTAGTTTAGCAAAAGCATTTGCT
TATCGTGCGGGAGTGATTTGTACCAATAGTGATTTTGGGCAATGTATCCCATATGCTGCATTTTCGAATATTTTTAGTTC
TACAATGATGAGTCATGAAATTCCAGCGTTAAAAGCGACGTTAGATGTTATAAAAAATGCTGATGATAGAAGGGAAAAAT
TATTTGATTTGTCTAAAGCATTACGGCTGGGATTGAAGGAGATAGGTCTTGAGTTAAGAAGTCAGTCCCATATCATTTCA
TTAGAAACTGGTGACGAATTAAATACTAAAAAAATTAGAGTTATTCTTGAAGAACAGGGTATATTTGGTTCAGTATTTTG
TCGTCCTGCAACACCAAAAAATAAGAACATTATTCGTTTTTCAATCAATAGCTCGTTAAGTTTTGAAGATGTAAGTAAGA
TAATTAAAGTCTGTGGTGAATTAATGAAAGACAAATCTGTATATTTTAAATAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(43-374)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

54.756

99.744

0.546

Multiple sequence alignment