Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   R1Y14_RS07370 Genome accession   NZ_CP136899
Coordinates   1436051..1436860 (-) Length   269 a.a.
NCBI ID   WP_001289493.1    Uniprot ID   Q9RCS5
Organism   Streptococcus pneumoniae strain ST62     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1431051..1441860
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R1Y14_RS07350 (R1Y14_07350) - 1433385..1434371 (+) 987 WP_000204727.1 L-lactate dehydrogenase -
  R1Y14_RS07355 (R1Y14_07355) - 1434672..1435415 (-) 744 Protein_1416 potassium channel family protein -
  R1Y14_RS07360 (R1Y14_07360) - 1435462..1435716 (-) 255 WP_001809704.1 type II toxin-antitoxin system RelE/ParE family toxin -
  R1Y14_RS07365 (R1Y14_07365) relB 1435718..1435960 (-) 243 WP_000208080.1 type II toxin-antitoxin system RelB family antitoxin -
  R1Y14_RS07370 (R1Y14_07370) vicX 1436051..1436860 (-) 810 WP_001289493.1 MBL fold metallo-hydrolase Regulator
  R1Y14_RS07375 (R1Y14_07375) micB 1436862..1438211 (-) 1350 WP_000886210.1 cell wall metabolism sensor histidine kinase VicK Regulator
  R1Y14_RS07380 (R1Y14_07380) micA 1438204..1438908 (-) 705 WP_000722076.1 response regulator YycF Regulator
  R1Y14_RS07385 (R1Y14_07385) mutY 1438963..1440138 (-) 1176 WP_000886153.1 A/G-specific adenine glycosylase -
  R1Y14_RS07390 (R1Y14_07390) - 1440235..1440360 (+) 126 WP_001818232.1 hypothetical protein -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 29916.89 Da        Isoelectric Point: 6.1743

>NTDB_id=893253 R1Y14_RS07370 WP_001289493.1 1436051..1436860(-) (vicX) [Streptococcus pneumoniae strain ST62]
MSEIGFKYSILASGSSGNSFYLETSKKKLLVDAGLSGKKITSLLAEINRKPEDLDAILITHEHSDHIHGVGVLARKYGMD
LYANEKTWQAMENSKYLGKVDSSQKHIFEMGKTKTFGDIDIESFGVSHDAVAPQFYRFMKDDKSFVLLTDTGYVSDRMAG
IVENADGYLIEANHDVEILRSGSYAWRLKQRILSDLGHLSNEDGAEAMIRTLGNRTKKIYLGHLSKENNIKELAHMTMVN
QLAQADLGVGVDFKVYDTSPDTATPLTEI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=893253 R1Y14_RS07370 WP_001289493.1 1436051..1436860(-) (vicX) [Streptococcus pneumoniae strain ST62]
ATGAGTGAAATAGGCTTTAAATACAGTATTTTAGCATCGGGTTCCAGTGGAAATTCTTTTTATCTGGAAACCTCAAAAAA
GAAGCTTTTAGTGGATGCAGGCTTGTCTGGCAAGAAAATTACCAGTCTGCTAGCTGAAATTAACCGCAAGCCAGAAGACC
TGGATGCCATCTTGATTACCCATGAGCATTCAGATCATATCCATGGAGTAGGCGTTTTGGCTCGCAAGTATGGTATGGAT
CTTTATGCCAATGAAAAGACCTGGCAAGCTATGGAAAATAGTAAATATCTTGGCAAGGTGGATTCTTCGCAAAAGCATAT
TTTTGAAATGGGTAAAACCAAAACCTTTGGAGATATCGACATCGAGAGTTTTGGTGTAAGCCATGATGCAGTCGCACCGC
AGTTCTATCGCTTTATGAAGGATGATAAGAGTTTTGTCCTTTTGACAGATACAGGTTATGTCAGTGACCGTATGGCGGGC
ATTGTCGAAAATGCGGATGGCTATCTTATCGAGGCCAACCATGATGTAGAGATTTTGCGATCAGGTTCTTACGCTTGGCG
ACTCAAACAACGAATCCTATCTGACCTTGGGCACCTTTCTAACGAGGACGGTGCTGAAGCTATGATTCGGACGCTAGGAA
ATCGTACTAAGAAGATTTACCTTGGGCATTTATCTAAGGAAAATAATATCAAGGAACTGGCTCATATGACCATGGTCAAT
CAGCTGGCTCAAGCTGACCTGGGAGTCGGAGTAGACTTTAAGGTTTATGATACCTCACCAGATACCGCAACACCATTGAC
AGAGATATAG

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9RCS5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

77.323

100

0.773