Detailed information NTG0893220

Bioinformatically predicted

Overview

• Name: rpoN/rpoN1
• Type: Machinery gene
• Locus tag: AAID36_RS16525
• Genome accession: NZ_CP154372
• Coordinates: 3385384..3386820 (-)
• Length: 478 a.a.
• NCBI ID: WP_083028679.1
• Uniprot ID: -
• Organism: Acinetobacter baumannii strain NCSR_106
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3380384..3391820

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAID36_RS16500 (AAID36_16505)	hisD	3381146..3382435 (-)	1290	WP_001253727.1	histidinol dehydrogenase	-
AAID36_RS16505 (AAID36_16510)	hisG	3382541..3383224 (-)	684	WP_001000724.1	ATP phosphoribosyltransferase	-
AAID36_RS16510 (AAID36_16515)	murA	3383224..3384480 (-)	1257	WP_000357156.1	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	-
AAID36_RS16515 (AAID36_16520)	ibaG	3384487..3384738 (-)	252	WP_001083680.1	BolA family iron metabolism protein IbaG	-
AAID36_RS16520 (AAID36_16525)	raiA	3384877..3385215 (-)	339	WP_001167461.1	ribosome-associated translation inhibitor RaiA	-
AAID36_RS16525 (AAID36_16530)	rpoN/rpoN1	3385384..3386820 (-)	1437	WP_083028679.1	RNA polymerase factor sigma-54	Machinery gene

Sequence

Protein

• Length: 478 a.a.
• Molecular weight: 54591.46 Da
• Isoelectric Point: 4.6864

>NTDB_id=893220 AAID36_RS16525 WP_083028679.1 3385384..3386820(-) (rpoN/rpoN1) [Acinetobacter baumannii strain NCSR_106]
MKLSVGLKVANSLSLTPQLQQAIRLLQLSSLELEQEIQIQLDSNPLLEKVEDESLAESLSTLEHKETDDLTTELNADHLP
VDTEWDDIYTHQSTALGTPEFEEREDNRQVHLTLKEHILEQVNLLNFSKIDQLIAYCIVDALDDKGFLDAELEEIILAVQ
HLLSEMDIDEEVEEDEVLVVLKHIQRLDPIGIGARNLAECLKVQLEFLPKETEYLKEARSLLQYYELLIANDLNKLLKQT
GLSKEQLKFAVDLLKTLKPYPGMDFEKQESEYQIPDVVVAKKDLHWQVQLNPDVMPKLRINSFYSSMIRRADQSDDNLYL
RNQMLEAKNFIKSIDERHKTLLKVATCIVEHQKAFLEIGPEAMKPLVLRDVAEEVELHESTVSRVTTNKYMLTPRGLFEL
KYFFSSHVGTTTGGEASSTAIRAMIKKLVSNENPRKPLSDNAIAALLKEEGIEVARRTVAKYRESLHIPSSSERKVLI

Nucleotide

• Length: 1437 bp

>NTDB_id=893220 AAID36_RS16525 WP_083028679.1 3385384..3386820(-) (rpoN/rpoN1) [Acinetobacter baumannii strain NCSR_106]
ATGAAATTATCTGTTGGATTGAAAGTTGCGAATTCATTATCGTTAACGCCTCAATTGCAGCAGGCAATCCGTTTACTACA
ACTTTCTAGCCTAGAGTTAGAGCAAGAAATCCAAATTCAATTAGATAGTAATCCATTACTTGAAAAAGTAGAAGATGAAT
CACTAGCAGAAAGTTTATCTACTTTAGAACACAAAGAAACTGATGACCTTACAACAGAGTTGAATGCTGATCACTTACCT
GTTGATACTGAATGGGATGACATTTATACACATCAATCCACTGCTTTGGGTACTCCTGAGTTCGAAGAGCGTGAAGATAA
TCGCCAAGTTCACCTGACGCTTAAAGAACATATTTTGGAGCAAGTGAACTTACTAAATTTTTCAAAAATAGATCAGTTGA
TTGCTTATTGCATAGTTGATGCTTTAGATGATAAAGGTTTTCTGGATGCTGAATTAGAAGAGATTATTTTGGCAGTACAG
CATTTATTAAGTGAGATGGATATAGATGAGGAAGTGGAAGAGGATGAAGTTTTAGTAGTCTTAAAACATATTCAACGTCT
TGATCCAATTGGTATTGGAGCTCGTAATTTAGCTGAATGTTTAAAAGTTCAGTTGGAGTTCTTGCCTAAAGAAACTGAAT
ATTTGAAAGAAGCTAGAAGTCTACTTCAATATTACGAATTACTGATTGCGAATGATCTTAATAAATTATTGAAGCAAACA
GGGCTTTCCAAGGAACAATTAAAATTTGCAGTTGATTTATTAAAAACATTAAAGCCTTATCCAGGCATGGATTTTGAAAA
GCAAGAATCAGAATATCAAATTCCTGACGTAGTCGTTGCCAAGAAGGACCTGCATTGGCAAGTTCAGTTAAATCCTGATG
TGATGCCAAAATTAAGAATCAATTCTTTTTATTCGAGTATGATTCGTAGAGCAGATCAAAGTGATGATAATTTATATCTA
CGTAATCAAATGCTTGAGGCAAAAAATTTTATAAAAAGTATTGATGAACGGCACAAAACATTATTAAAAGTTGCGACTTG
TATTGTTGAGCATCAAAAAGCATTTCTTGAAATAGGTCCCGAAGCAATGAAACCCTTAGTACTAAGGGATGTTGCAGAAG
AAGTAGAATTACATGAGTCGACCGTTTCTCGTGTTACCACAAATAAGTATATGCTTACTCCACGTGGACTTTTTGAGTTG
AAATACTTCTTTTCTAGTCATGTGGGGACAACCACCGGAGGTGAGGCTTCTTCTACCGCAATTCGGGCAATGATTAAAAA
GTTAGTTTCTAATGAAAATCCGCGTAAACCTTTGTCTGATAATGCAATTGCTGCTTTATTGAAAGAGGAGGGAATAGAAG
TAGCTAGAAGGACTGTAGCAAAATATAGAGAATCGTTACATATTCCATCGTCATCCGAGAGAAAAGTCTTGATCTAA

Domains

Predicted by InterProScan.

• Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID) (7-48)

• Sigma-54 factor, core binding domain (Sigma54_CBD) (107-304)

• Sigma-54, DNA binding domain (Sigma54_DBD) (319-475)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoN/rpoN1	Ralstonia pseudosolanacearum GMI1000	43.418	100	0.462