Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   R0137_RS16370 Genome accession   NZ_CP136865
Coordinates   3665143..3666516 (-) Length   457 a.a.
NCBI ID   WP_407327490.1    Uniprot ID   -
Organism   Congregibacter brevis strain IMCC45268     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3660143..3671516
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R0137_RS16345 (R0137_16305) nrdR 3660184..3660687 (-) 504 WP_407327485.1 transcriptional regulator NrdR -
  R0137_RS16350 (R0137_16310) glyA 3660741..3662036 (-) 1296 WP_407327486.1 serine hydroxymethyltransferase -
  R0137_RS16355 (R0137_16315) ettA 3662163..3663827 (+) 1665 WP_407327487.1 energy-dependent translational throttle protein EttA -
  R0137_RS16360 (R0137_16320) - 3663901..3664272 (+) 372 WP_407327488.1 PilZ domain-containing protein -
  R0137_RS16365 (R0137_16325) - 3664269..3665138 (+) 870 WP_407327489.1 peptidyl-prolyl cis-trans isomerase -
  R0137_RS16370 (R0137_16330) radA 3665143..3666516 (-) 1374 WP_407327490.1 DNA repair protein RadA Machinery gene
  R0137_RS16375 (R0137_16335) - 3666610..3667386 (+) 777 WP_407327491.1 DnaT-like ssDNA-binding domain-containing protein -
  R0137_RS16380 (R0137_16340) - 3667298..3667966 (+) 669 WP_407327492.1 replication protein P -
  R0137_RS16385 (R0137_16345) - 3667976..3668983 (+) 1008 WP_407327493.1 polysaccharide deacetylase family protein -
  R0137_RS16390 (R0137_16350) dnaB 3669005..3670417 (-) 1413 WP_405272463.1 replicative DNA helicase -
  R0137_RS16395 (R0137_16355) rplI 3670561..3671010 (-) 450 WP_407327494.1 50S ribosomal protein L9 -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 48510.74 Da        Isoelectric Point: 6.6869

>NTDB_id=893194 R0137_RS16370 WP_407327490.1 3665143..3666516(-) (radA) [Congregibacter brevis strain IMCC45268]
MAKAKTAFVCSDCGSDYHKWQGQCSDCGAWNTLSEIRLGSAKSTGRSSAGRSQGFAGELAPARVLSEIDVSEVQRIPTGM
TEFDRVLGGGLVPGSAILLGGNPGAGKSTLLLQACCGLASQMPALYVTGEESPQQIAMRAQRLSLPLDQLKLMAETNVEA
ILTALDAHQPKLLVVDSIQVVYSEELSSAPGSVSQVRDCAATLTRAAKQRGIVLLLVGHVTKDGSLAGPKVLEHMIDCSV
LLESSDDQRFRTLRGQKNRFGAVNELGIFAMTEQGLREVRNPSAIFLERGEKQSSGSVVMVVWEGTRPLLVEIQALVDDS
PLGNPRRLAVGLEQNRLAMLLAILHRHGGLQVGDQDVFANVVGGVRVLETSVDLALLLAIVSSFRDRPLPRDLVVFGEVG
LAGEIRPVPSGQERLSEAAKHGFARAIVPRGNAPKTSPPGMQVHAVATLAEALALDL

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=893194 R0137_RS16370 WP_407327490.1 3665143..3666516(-) (radA) [Congregibacter brevis strain IMCC45268]
ATGGCCAAGGCAAAAACCGCTTTTGTGTGCAGCGACTGCGGTTCGGACTATCACAAGTGGCAGGGCCAGTGCAGCGATTG
CGGGGCCTGGAACACGCTAAGCGAGATACGTTTGGGTAGTGCTAAAAGTACAGGACGGTCTTCTGCGGGCCGAAGTCAGG
GATTTGCTGGGGAACTCGCGCCAGCGCGTGTGCTCAGTGAGATTGATGTATCTGAAGTGCAGCGCATTCCCACGGGGATG
ACGGAGTTCGACCGCGTCTTGGGTGGCGGCCTTGTGCCAGGTTCAGCGATTCTGTTGGGAGGCAATCCTGGCGCGGGGAA
GAGCACGCTACTTCTGCAGGCTTGCTGCGGCCTGGCCAGTCAAATGCCCGCGCTGTATGTCACAGGAGAGGAAAGCCCTC
AGCAGATCGCGATGCGTGCGCAGCGCCTCTCTCTCCCCCTAGATCAACTAAAACTCATGGCGGAAACCAATGTCGAAGCT
ATTCTGACGGCTTTGGACGCCCATCAGCCCAAGCTGTTGGTGGTTGACTCTATTCAGGTTGTGTACAGCGAAGAGCTGAG
CTCCGCTCCGGGGAGCGTATCTCAGGTGCGCGACTGCGCAGCCACGCTGACCCGTGCCGCGAAACAGCGGGGCATCGTTT
TGTTGCTGGTAGGCCATGTGACCAAGGATGGGAGCCTTGCCGGTCCCAAAGTACTTGAGCACATGATTGATTGCTCGGTG
CTGCTCGAGAGCTCTGATGATCAGCGATTTCGAACTTTACGAGGCCAGAAAAATCGTTTCGGTGCGGTGAATGAGCTGGG
TATTTTTGCTATGACCGAACAGGGGCTACGCGAGGTACGAAATCCCTCAGCGATTTTTCTGGAGCGCGGTGAGAAGCAGT
CTTCCGGCAGCGTTGTCATGGTGGTCTGGGAGGGCACTAGACCCTTGCTGGTGGAGATACAGGCGCTGGTGGACGATAGC
CCCTTGGGTAATCCCCGTCGTCTGGCCGTAGGCTTGGAGCAGAACCGTCTGGCTATGCTCTTAGCTATTCTGCATCGCCA
CGGTGGCCTTCAGGTGGGTGATCAGGATGTATTTGCCAACGTTGTCGGAGGCGTCCGTGTCCTTGAGACGAGCGTTGATT
TAGCGTTGCTCCTGGCCATTGTGTCGAGTTTCAGAGATCGGCCGCTACCTCGAGACCTGGTGGTGTTTGGAGAAGTCGGT
CTAGCGGGAGAGATTCGGCCCGTCCCGTCGGGGCAGGAGCGGCTGTCCGAAGCGGCTAAACACGGCTTTGCTCGAGCGAT
TGTGCCTCGGGGTAACGCACCCAAGACATCTCCGCCAGGTATGCAGGTGCACGCCGTAGCGACTCTAGCGGAAGCCTTGG
CTCTGGACTTGTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(365-432)

AAA domain (AAA_25)

(72-224)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

47.826

100

0.481
  radA Streptococcus mitis NCTC 12261

44.493

99.344

0.442
  radA Streptococcus mitis SK321

44.273

99.344

0.44
  radA Streptococcus pneumoniae Rx1

44.273

99.344

0.44
  radA Streptococcus pneumoniae D39

44.273

99.344

0.44
  radA Streptococcus pneumoniae R6

44.273

99.344

0.44
  radA Streptococcus pneumoniae TIGR4

44.273

99.344

0.44