Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimT   Type   Machinery gene
Locus tag   AAID36_RS03220 Genome accession   NZ_CP154372
Coordinates   655151..655666 (-) Length   171 a.a.
NCBI ID   WP_000477151.1    Uniprot ID   V5VA61
Organism   Acinetobacter baumannii strain NCSR_106     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 650151..660666
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAID36_RS03195 (AAID36_03200) - 650697..652340 (+) 1644 WP_000281764.1 nitrite/sulfite reductase -
  AAID36_RS03200 (AAID36_03205) - 652333..652818 (+) 486 WP_000935247.1 DUF934 domain-containing protein -
  AAID36_RS03205 (AAID36_03210) - 652901..653254 (+) 354 WP_000457783.1 SMR family transporter -
  AAID36_RS03210 (AAID36_03215) - 653297..653740 (-) 444 WP_001176585.1 VOC family protein -
  AAID36_RS03215 (AAID36_03220) - 653867..655042 (-) 1176 WP_000129968.1 thiolase family protein -
  AAID36_RS03220 (AAID36_03225) fimT 655151..655666 (-) 516 WP_000477151.1 GspH/FimT family pseudopilin Machinery gene
  AAID36_RS03225 (AAID36_03230) omp38 656046..657107 (+) 1062 WP_000777885.1 outer membrane protein Omp38 -
  AAID36_RS03230 (AAID36_03235) - 657230..657388 (-) 159 WP_000692859.1 hypothetical protein -
  AAID36_RS03235 (AAID36_03240) - 657392..658597 (-) 1206 WP_000512708.1 RtcB family protein -
  AAID36_RS03240 (AAID36_03245) - 658875..660335 (-) 1461 WP_000004974.1 amino acid permease -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19606.86 Da        Isoelectric Point: 8.8196

>NTDB_id=893183 AAID36_RS03220 WP_000477151.1 655151..655666(-) (fimT) [Acinetobacter baumannii strain NCSR_106]
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNRNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC

Nucleotide


Download         Length: 516 bp        

>NTDB_id=893183 AAID36_RS03220 WP_000477151.1 655151..655666(-) (fimT) [Acinetobacter baumannii strain NCSR_106]
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGCATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGTCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCGTAATCTACAACATGATTTAAATGAAGAATTATTGACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAT
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTGCGCTTAGAAGAGCTTAAAAATTGTTAG

Domains

Predicted by InterProScan.

Type II transport protein GspH (GspH)

(50-149)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB V5VA61

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimT Acinetobacter baylyi ADP1

43.976

97.076

0.427