Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   R0135_RS15470 Genome accession   NZ_CP136864
Coordinates   3474989..3476362 (+) Length   457 a.a.
NCBI ID   WP_407347813.1    Uniprot ID   -
Organism   Congregibacter variabilis strain IMCC43200     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3469989..3481362
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R0135_RS15445 (R0135_15385) rplI 3470546..3470995 (+) 450 WP_407347808.1 50S ribosomal protein L9 -
  R0135_RS15450 (R0135_15390) dnaB 3471098..3472498 (+) 1401 WP_407347809.1 replicative DNA helicase -
  R0135_RS15455 (R0135_15395) - 3472530..3473537 (-) 1008 WP_407347810.1 polysaccharide deacetylase family protein -
  R0135_RS15460 (R0135_15400) - 3473548..3474216 (-) 669 WP_407347811.1 replication protein P -
  R0135_RS15465 (R0135_15405) - 3474128..3474895 (-) 768 WP_407347812.1 DnaT-like ssDNA-binding domain-containing protein -
  R0135_RS15470 (R0135_15410) radA 3474989..3476362 (+) 1374 WP_407347813.1 DNA repair protein RadA Machinery gene
  R0135_RS15475 (R0135_15415) - 3476367..3477230 (-) 864 WP_407347814.1 peptidyl-prolyl cis-trans isomerase -
  R0135_RS15480 (R0135_15420) - 3477230..3477598 (-) 369 WP_407347815.1 PilZ domain-containing protein -
  R0135_RS15485 (R0135_15425) ettA 3477670..3479334 (-) 1665 WP_407347816.1 energy-dependent translational throttle protein EttA -
  R0135_RS15490 (R0135_15430) glyA 3479461..3480756 (+) 1296 WP_407347817.1 serine hydroxymethyltransferase -
  R0135_RS15495 (R0135_15435) nrdR 3480795..3481286 (+) 492 WP_407347818.1 transcriptional regulator NrdR -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 48516.84 Da        Isoelectric Point: 6.8873

>NTDB_id=893167 R0135_RS15470 WP_407347813.1 3474989..3476362(+) (radA) [Congregibacter variabilis strain IMCC43200]
MAKAKTAFVCSDCGSDYHKWQGQCSDCGAWNTLSEIRLSGAKGSGRSPAGRSQGFAGELAPARVLSEIDVSQVQRIPTGM
AEFDRVLGGGLVPGSAILLGGNPGAGKSTLLLQACCQLASQMSALYVTGEESPQQIAMRAQRLSLPLDQLKLMAETNIEA
ILAALDAHQPKLLVVDSIQVVYSEELSSAPGSVSQVRDCAATLTRAAKQRGIVLLLVGHVTKDGSLAGPKVLEHMIDCSV
LLESSDDQRFRTLRGQKNRFGAVNELGIFAMTEQGLREVRNPSAIFLERGEKQSSGSVVMVVWEGTRPLLVEIQALVDDS
PLGNPRRLAVGLEQNRLAMLLAILHRHGGLQVGDQDVFANVVGGVRILETSVDLALLLAIVSSFRDRPLPRDLVVFGEVG
LAGEIRPVPSGQERLAEAAKHGFVRAIVPRGNAPKTSPPGMQVHAVATLAEALALDL

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=893167 R0135_RS15470 WP_407347813.1 3474989..3476362(+) (radA) [Congregibacter variabilis strain IMCC43200]
ATGGCAAAGGCAAAAACGGCCTTCGTGTGCAGCGATTGTGGTTCGGACTATCACAAGTGGCAGGGGCAGTGCAGTGACTG
CGGGGCCTGGAATACGCTTAGTGAGATTCGCTTAAGTGGCGCCAAAGGCTCTGGACGATCTCCGGCGGGCCGCAGTCAGG
GCTTTGCAGGGGAACTGGCCCCAGCTCGGGTGCTCAGCGAGATTGATGTCTCACAAGTGCAGCGTATCCCTACCGGTATG
GCAGAATTTGATCGGGTGCTTGGAGGGGGTTTGGTGCCGGGGTCGGCCATTCTCCTGGGGGGCAACCCGGGCGCCGGAAA
AAGCACGTTGCTATTGCAGGCCTGCTGCCAGTTAGCGAGTCAAATGTCGGCTTTGTATGTGACGGGTGAGGAGAGCCCTC
AGCAGATAGCCATGCGGGCACAGCGATTGTCTCTGCCTCTGGATCAGCTAAAACTTATGGCAGAGACCAATATTGAGGCC
ATACTTGCTGCTTTAGATGCTCATCAGCCCAAATTGTTGGTGGTGGATTCCATTCAGGTGGTCTACAGCGAAGAGCTTAG
CTCCGCGCCGGGCAGTGTTTCTCAGGTGCGAGATTGTGCAGCCACATTGACTCGCGCCGCCAAGCAGCGGGGCATCGTCC
TGTTGCTGGTTGGTCATGTCACCAAAGATGGCAGTCTTGCAGGCCCCAAAGTGCTGGAACACATGATTGATTGCTCGGTG
CTTCTTGAGAGCTCTGATGATCAGCGTTTTCGCACACTGCGCGGACAGAAGAATCGCTTTGGGGCGGTGAATGAGCTGGG
TATTTTTGCCATGACCGAGCAGGGGCTTCGGGAAGTACGAAACCCCTCGGCAATCTTTCTTGAGCGTGGCGAAAAACAAT
CCTCCGGGAGTGTGGTGATGGTGGTCTGGGAGGGCACCCGGCCCCTCTTGGTCGAAATTCAGGCTCTGGTGGACGACAGC
CCTTTGGGCAATCCGCGTCGTCTGGCGGTCGGTTTGGAGCAGAATCGACTTGCCATGTTGTTGGCAATTTTACACCGCCA
TGGAGGCTTGCAGGTCGGCGATCAGGATGTGTTTGCCAATGTGGTTGGTGGTGTACGCATACTCGAGACCAGTGTCGATC
TGGCGTTGCTGCTGGCCATTGTCTCGAGCTTTCGAGATCGTCCTTTACCCCGGGATCTGGTGGTGTTTGGCGAGGTGGGC
CTGGCAGGGGAGATTCGTCCCGTGCCTTCGGGGCAGGAGCGTCTAGCAGAGGCGGCCAAACACGGTTTTGTCCGTGCCAT
AGTGCCGCGGGGCAATGCGCCAAAGACCTCTCCACCAGGTATGCAGGTTCACGCTGTGGCTACCCTTGCTGAGGCGCTCG
CGCTGGACTTGTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(365-432)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(71-224)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

47.732

100

0.484
  radA Streptococcus mitis SK321

44.493

99.344

0.442
  radA Streptococcus pneumoniae Rx1

44.493

99.344

0.442
  radA Streptococcus pneumoniae TIGR4

44.493

99.344

0.442
  radA Streptococcus pneumoniae D39

44.493

99.344

0.442
  radA Streptococcus pneumoniae R6

44.493

99.344

0.442
  radA Streptococcus mitis NCTC 12261

44.273

99.344

0.44