Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   R0135_RS11470 Genome accession   NZ_CP136864
Coordinates   2601053..2602087 (-) Length   344 a.a.
NCBI ID   WP_407346990.1    Uniprot ID   -
Organism   Congregibacter variabilis strain IMCC43200     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2596053..2607087
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R0135_RS11440 (R0135_11400) hemW 2596064..2597197 (+) 1134 WP_407346986.1 radical SAM family heme chaperone HemW -
  R0135_RS11445 (R0135_11405) trmB 2597194..2597832 (-) 639 WP_407349913.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  R0135_RS11450 (R0135_11410) - 2597897..2598277 (-) 381 WP_407346987.1 DUF423 domain-containing protein -
  R0135_RS11455 (R0135_11415) rpoH 2598343..2599185 (-) 843 WP_407349915.1 RNA polymerase sigma factor RpoH -
  R0135_RS11460 (R0135_11420) ftsX 2599400..2600377 (-) 978 WP_407346988.1 permease-like cell division protein FtsX -
  R0135_RS11465 (R0135_11425) ftsE 2600367..2601044 (-) 678 WP_407346989.1 cell division ATP-binding protein FtsE -
  R0135_RS11470 (R0135_11430) pilA 2601053..2602087 (-) 1035 WP_407346990.1 signal recognition particle-docking protein FtsY Machinery gene
  R0135_RS11475 (R0135_11435) rsmD 2602175..2602750 (+) 576 WP_407346991.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  R0135_RS11480 (R0135_11440) coaD 2602800..2603294 (+) 495 WP_407346992.1 pantetheine-phosphate adenylyltransferase -
  R0135_RS11485 (R0135_11445) - 2603337..2603720 (-) 384 WP_407346993.1 hypothetical protein -
  R0135_RS11490 (R0135_11450) mutM 2603773..2604585 (-) 813 WP_407346994.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  R0135_RS11495 (R0135_11455) rpmG 2604707..2604862 (-) 156 WP_008293439.1 50S ribosomal protein L33 -
  R0135_RS11500 (R0135_11460) rpmB 2604907..2605143 (-) 237 WP_407346995.1 50S ribosomal protein L28 -
  R0135_RS11505 (R0135_11465) radC 2605706..2606380 (-) 675 WP_407346996.1 DNA repair protein RadC -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 36981.06 Da        Isoelectric Point: 4.7886

>NTDB_id=893162 R0135_RS11470 WP_407346990.1 2601053..2602087(-) (pilA) [Congregibacter variabilis strain IMCC43200]
MKFFRSKPEEAKEDVPPDVSQVPAPVDSEPSEDDKDPTGPGFFGRLKRGLGRTSDSLAAGFGNLFLGRKTIDADLLEELE
SQLLMADVGIEATSEIIAHLTDRVSRKELSDPEALMQGLREELQSILQPCEKNLDVSTGAPFVILMVGVNGVGKTTTIGK
LARRFQEEGRSVMLAAGDTFRAAAVEQLQHWGERHDIPVIAQHTGADSASVIYDALQAATARGVDVLIADTAGRLSNKSH
LMDELSKVVRVMGKLNPQAPHEVMLVLDAGTGQNALSQASQFRDAVGVTGLTLTKLDGTAKGGVIFAIARRLGLPIRFIG
VGESALDLRPFVAEEFIQALFDRD

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=893162 R0135_RS11470 WP_407346990.1 2601053..2602087(-) (pilA) [Congregibacter variabilis strain IMCC43200]
ATGAAGTTTTTCCGATCCAAGCCAGAAGAAGCCAAAGAAGATGTCCCGCCGGATGTGTCGCAGGTGCCCGCGCCCGTCGA
TTCTGAGCCGAGTGAGGATGACAAGGACCCTACCGGCCCCGGCTTTTTTGGTCGTTTGAAGCGGGGCCTGGGCCGTACCA
GCGACAGTTTGGCTGCCGGTTTTGGCAATTTGTTTTTGGGTCGAAAAACCATCGATGCTGATCTACTCGAGGAACTTGAA
TCACAGCTTCTTATGGCAGACGTGGGTATCGAAGCCACCAGTGAAATCATTGCCCACCTCACAGACCGGGTGTCGCGCAA
GGAGCTGTCTGATCCAGAGGCGCTGATGCAGGGCCTGCGGGAAGAGCTCCAGAGCATTTTGCAGCCCTGCGAGAAAAACC
TTGATGTGAGTACGGGTGCGCCGTTTGTGATTCTCATGGTCGGTGTTAACGGGGTAGGTAAAACCACGACCATCGGCAAG
TTGGCGCGACGCTTTCAGGAAGAGGGTCGCTCGGTCATGTTGGCTGCGGGCGATACATTTCGCGCCGCCGCGGTGGAGCA
GTTACAGCACTGGGGGGAGCGGCACGATATACCGGTGATCGCGCAGCACACCGGCGCTGATAGCGCCTCAGTGATTTATG
ACGCCTTACAGGCGGCCACCGCCCGGGGCGTCGACGTTCTTATTGCGGATACTGCGGGGCGGCTCTCCAATAAAAGCCAC
CTGATGGACGAACTGAGTAAGGTGGTGCGGGTGATGGGCAAGCTCAACCCCCAGGCGCCTCACGAGGTGATGCTCGTGCT
TGATGCCGGTACGGGACAAAATGCGCTCTCGCAGGCCTCGCAGTTTCGCGATGCCGTGGGGGTCACGGGGCTGACGCTGA
CCAAGCTCGATGGAACAGCAAAAGGCGGCGTTATCTTTGCTATCGCCAGACGCCTGGGGCTGCCCATTCGTTTTATTGGC
GTTGGAGAATCTGCTCTGGACCTTCGTCCCTTTGTGGCCGAAGAGTTTATACAGGCGCTGTTTGATCGCGATTGA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(141-341)

SRP54-type protein, helical bundle domain (SRP54_N)

(60-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

50.149

97.384

0.488