Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   OCV37_RS12080 Genome accession   NZ_AP024903
Coordinates   2780752..2781270 (-) Length   172 a.a.
NCBI ID   WP_038183133.1    Uniprot ID   -
Organism   Vibrio rhizosphaerae strain LMG 23790     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2775752..2786270
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV37_RS12055 rimM 2775825..2776379 (-) 555 WP_038183146.1 ribosome maturation factor RimM -
  OCV37_RS12060 rpsP 2776402..2776650 (-) 249 WP_038183143.1 30S ribosomal protein S16 -
  OCV37_RS12065 ffh 2776827..2778197 (-) 1371 WP_038183140.1 signal recognition particle protein -
  OCV37_RS12070 - 2778450..2779244 (+) 795 WP_038183137.1 inner membrane protein YpjD -
  OCV37_RS12075 - 2779328..2780602 (+) 1275 WP_038183135.1 HlyC/CorC family transporter -
  OCV37_RS12080 luxS 2780752..2781270 (-) 519 WP_038183133.1 S-ribosylhomocysteine lyase Regulator
  OCV37_RS12085 gshA 2781426..2783027 (-) 1602 WP_038183131.1 glutamate--cysteine ligase -
  OCV37_RS12090 - 2783126..2785969 (-) 2844 WP_038183129.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18909.73 Da        Isoelectric Point: 4.9665

>NTDB_id=89315 OCV37_RS12080 WP_038183133.1 2780752..2781270(-) (luxS) [Vibrio rhizosphaerae strain LMG 23790]
MPLLDSFTVDHTRMNAPAVRVAKTMNTPKGDTITVFDLRFTVPNQDILSEKGIHTLEHLFAGFMRAHLNGNGVEIIDISP
MGCRTGFYMSLIGVPSEQRVADAWLAAMQDVLKVEDQNKIPELNIYQCGTAAMHSLGEAKDIAQAVISSGIRVNKNDDLA
LPESMLQELKVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=89315 OCV37_RS12080 WP_038183133.1 2780752..2781270(-) (luxS) [Vibrio rhizosphaerae strain LMG 23790]
ATGCCATTATTAGATAGTTTTACGGTCGATCATACACGTATGAATGCACCGGCCGTTCGTGTTGCTAAAACCATGAATAC
CCCTAAAGGCGACACGATCACAGTATTTGATTTACGCTTCACTGTTCCGAATCAGGATATCCTTTCTGAAAAAGGTATTC
ATACACTTGAGCATTTATTTGCTGGCTTTATGAGAGCACATCTCAATGGTAATGGTGTTGAAATCATTGATATCTCTCCG
ATGGGATGTCGCACTGGTTTTTACATGAGCTTGATCGGTGTACCTTCTGAACAGCGAGTTGCTGATGCTTGGTTAGCCGC
AATGCAAGATGTGCTGAAAGTTGAAGACCAGAACAAAATCCCAGAATTGAACATTTATCAGTGCGGAACTGCAGCAATGC
ACTCTCTGGGCGAAGCAAAAGATATTGCTCAGGCTGTTATTTCCAGTGGGATTCGCGTGAATAAGAATGATGATCTGGCG
CTACCAGAATCAATGCTTCAAGAGCTGAAAGTGGACTGA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

84.795

99.419

0.843

Multiple sequence alignment