Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   AAH969_RS30195 Genome accession   NZ_CP154349
Coordinates   6452467..6452991 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain PAE3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6447467..6457991
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAH969_RS30180 (AAH969_30190) aroB 6448583..6449689 (-) 1107 WP_003107839.1 3-dehydroquinate synthase -
  AAH969_RS30185 (AAH969_30195) aroK 6449739..6450257 (-) 519 WP_003095833.1 shikimate kinase AroK -
  AAH969_RS30190 (AAH969_30200) pilQ 6450269..6452413 (-) 2145 WP_003123619.1 type 4a pilus secretin PilQ Machinery gene
  AAH969_RS30195 (AAH969_30205) comL/pilP 6452467..6452991 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  AAH969_RS30200 (AAH969_30210) pilO 6452988..6453611 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  AAH969_RS30205 (AAH969_30215) pilN 6453608..6454204 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  AAH969_RS30210 (AAH969_30220) pilM 6454204..6455268 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  AAH969_RS30215 (AAH969_30225) - 6455453..6457924 (+) 2472 WP_031756300.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=893140 AAH969_RS30195 WP_003095836.1 6452467..6452991(-) (comL/pilP) [Pseudomonas aeruginosa strain PAE3]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=893140 AAH969_RS30195 WP_003095836.1 6452467..6452991(-) (comL/pilP) [Pseudomonas aeruginosa strain PAE3]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGGCCCAAGGGCACTATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362