Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   AABK13_RS19725 Genome accession   NZ_AP027697
Coordinates   4045142..4045657 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain PSS-12     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4040142..4050657
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABK13_RS19680 (VEE19_37960) csrA 4040729..4040914 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  AABK13_RS19710 (VEE19_37970) yqaB 4042372..4042938 (+) 567 WP_000273290.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  AABK13_RS19715 (VEE19_37980) yqaA 4042935..4043363 (+) 429 WP_001287454.1 YqaA family protein -
  AABK13_RS19720 (VEE19_37990) gshA 4043436..4044992 (+) 1557 WP_000611804.1 glutamate--cysteine ligase -
  AABK13_RS19725 (VEE19_38000) luxS 4045142..4045657 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  AABK13_RS19730 (VEE19_38010) emrB 4045721..4047259 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  AABK13_RS19735 (VEE19_38020) emrA 4047276..4048448 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  AABK13_RS19740 (VEE19_38030) emrR 4048575..4049105 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  AABK13_RS19745 (VEE19_38040) ygaH 4049196..4049531 (-) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  AABK13_RS19750 (VEE19_38050) ygaZ 4049521..4050258 (-) 738 WP_000445651.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=89307 AABK13_RS19725 WP_001130211.1 4045142..4045657(+) (luxS) [Escherichia coli strain PSS-12]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=89307 AABK13_RS19725 WP_001130211.1 4045142..4045657(+) (luxS) [Escherichia coli strain PSS-12]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment