Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   AAH969_RS02260 Genome accession   NZ_CP154349
Coordinates   481508..481873 (+) Length   121 a.a.
NCBI ID   WP_003084587.1    Uniprot ID   A0A0H2ZKW2
Organism   Pseudomonas aeruginosa strain PAE3     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 476508..486873
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAH969_RS02230 (AAH969_02230) pyrR 477130..477642 (-) 513 WP_003084574.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  AAH969_RS02235 (AAH969_02235) ruvX 477754..478188 (-) 435 WP_003084575.1 Holliday junction resolvase RuvX -
  AAH969_RS02240 (AAH969_02240) - 478188..478757 (-) 570 WP_003084577.1 YqgE/AlgH family protein -
  AAH969_RS02245 (AAH969_02245) - 478806..479699 (-) 894 WP_003162015.1 energy transducer TonB -
  AAH969_RS02250 (AAH969_02250) gshB 479846..480799 (-) 954 WP_003100943.1 glutathione synthase -
  AAH969_RS02255 (AAH969_02255) pilG 481054..481461 (+) 408 WP_003084583.1 twitching motility response regulator PilG Regulator
  AAH969_RS02260 (AAH969_02260) pilH 481508..481873 (+) 366 WP_003084587.1 twitching motility response regulator PilH Machinery gene
  AAH969_RS02265 (AAH969_02265) - 481924..482460 (+) 537 WP_003084590.1 chemotaxis protein CheW -
  AAH969_RS02270 (AAH969_02270) pilJ 482545..484593 (+) 2049 Protein_452 chemotaxis chemoreceptor PilJ -
  AAH969_RS02275 (AAH969_02275) pilK 484654..485529 (+) 876 WP_031757002.1 type 4 fimbrial methyltransferase PilK -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13273.30 Da        Isoelectric Point: 5.1961

>NTDB_id=893066 AAH969_RS02260 WP_003084587.1 481508..481873(+) (pilH) [Pseudomonas aeruginosa strain PAE3]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=893066 AAH969_RS02260 WP_003084587.1 481508..481873(+) (pilH) [Pseudomonas aeruginosa strain PAE3]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGTCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCCTGGCCCGCCAGGAAAAGCCCGACGTGGTCCTGATGGACATCG
TCATGCCCGGCCTCAACGGCTTCCAGGCGACCCGTCAATTGACCAAGGACGCCGAGACCAGCGCCATCCCGGTGATCATC
GTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGCGCTCGCGACTACCTGACCAAGCCGGTGGA
CGAAGAGACCCTGCTGAAAACCATCAATGCGGTGCTGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZKW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364