Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   R1917_RS14800 Genome accession   NZ_CP136828
Coordinates   3027455..3028078 (-) Length   207 a.a.
NCBI ID   WP_198448288.1    Uniprot ID   -
Organism   Citrobacter koseri strain K2521     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3022455..3033078
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R1917_RS14785 (R1917_14785) helD 3022696..3024750 (-) 2055 WP_275147284.1 DNA helicase IV -
  R1917_RS14790 (R1917_14790) - 3024874..3025320 (+) 447 WP_275147283.1 YccF domain-containing protein -
  R1917_RS14795 (R1917_14795) yccS 3025339..3027486 (+) 2148 WP_214318964.1 YccS family putative transporter -
  R1917_RS14800 (R1917_14800) sxy/tfoX 3027455..3028078 (-) 624 WP_198448288.1 TfoX/Sxy family DNA transformation protein Regulator
  R1917_RS14805 (R1917_14805) sulA 3028295..3028804 (+) 510 WP_012132966.1 SOS-induced cell division inhibitor SulA -
  R1917_RS14810 (R1917_14810) ompA 3029160..3030206 (+) 1047 WP_047463714.1 porin OmpA -
  R1917_RS14815 (R1917_14815) matP 3030281..3030733 (-) 453 WP_012132968.1 macrodomain Ter protein MatP -
  R1917_RS14820 (R1917_14820) - 3030919..3032679 (+) 1761 WP_104868827.1 Lon protease family protein -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 23969.68 Da        Isoelectric Point: 9.4100

>NTDB_id=893049 R1917_RS14800 WP_198448288.1 3027455..3028078(-) (sxy/tfoX) [Citrobacter koseri strain K2521]
MKLRSYDKIYKSQEYLASLGTVHYRSLFGSYSLTIEDTVFAMVAEGELYLRACEQSVAYCVKHSPVWLTFMKRGRPVMLN
YYRVDESLWRDQQQLVLLSQYSLDAAIKEKRTRFSQRRLKNLPNVTFHLENLLHEAGINDENTLRILGAKMCWLRLRESN
KLLTVKTLYALEGAIVGVHEAALPAVRRQELAEWAQSLTPEHQKATA

Nucleotide


Download         Length: 624 bp        

>NTDB_id=893049 R1917_RS14800 WP_198448288.1 3027455..3028078(-) (sxy/tfoX) [Citrobacter koseri strain K2521]
ATGAAATTACGCTCCTATGACAAGATCTATAAATCACAAGAATATTTAGCCTCTCTGGGCACGGTTCACTATCGTTCGCT
GTTTGGTAGCTACAGCCTGACAATCGAGGATACGGTGTTTGCGATGGTGGCTGAGGGAGAGCTATACCTGCGCGCCTGTG
AGCAAAGCGTCGCGTATTGCGTGAAGCATTCCCCCGTCTGGTTAACATTTATGAAACGTGGCCGTCCCGTTATGTTGAAT
TATTACCGGGTGGATGAAAGCTTATGGCGCGATCAACAACAGCTGGTGCTTTTATCGCAGTATTCGCTGGATGCAGCCAT
AAAAGAAAAACGTACCCGTTTTTCACAACGTCGATTGAAGAATCTGCCAAACGTGACGTTTCATCTGGAGAACCTTCTGC
ATGAGGCCGGAATTAATGATGAAAACACATTGCGGATACTCGGCGCAAAAATGTGTTGGCTGCGGCTAAGAGAGAGCAAT
AAGCTGCTGACGGTGAAAACTCTCTATGCGTTAGAAGGGGCAATCGTTGGCGTACATGAAGCGGCGCTCCCGGCGGTACG
CCGCCAGGAGCTTGCTGAGTGGGCGCAGTCGCTTACGCCGGAGCACCAGAAGGCGACGGCGTGA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

71.921

98.068

0.705