Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OCV37_RS01235 Genome accession   NZ_AP024903
Coordinates   290895..291899 (+) Length   334 a.a.
NCBI ID   WP_038178734.1    Uniprot ID   -
Organism   Vibrio rhizosphaerae strain LMG 23790     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 285895..296899
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV37_RS01220 - 286371..287648 (-) 1278 WP_038178736.1 malic enzyme-like NAD(P)-binding protein -
  OCV37_RS01225 rpmE 287968..288189 (-) 222 WP_038178735.1 50S ribosomal protein L31 -
  OCV37_RS01230 priA 288441..290645 (+) 2205 WP_038178924.1 primosomal protein N' -
  OCV37_RS01235 cytR 290895..291899 (+) 1005 WP_038178734.1 DNA-binding transcriptional regulator CytR Regulator
  OCV37_RS01240 ftsN 292005..292550 (+) 546 WP_038178733.1 cell division protein FtsN -
  OCV37_RS01245 hslV 292693..293232 (+) 540 WP_038178732.1 ATP-dependent protease subunit HslV -
  OCV37_RS01250 hslU 293277..294608 (+) 1332 WP_038178727.1 HslU--HslV peptidase ATPase subunit -
  OCV37_RS01255 - 294785..295702 (+) 918 WP_038178725.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  OCV37_RS01260 rraA 295779..296342 (+) 564 WP_038178724.1 ribonuclease E activity regulator RraA -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 36676.25 Da        Isoelectric Point: 6.6912

>NTDB_id=89301 OCV37_RS01235 WP_038178734.1 290895..291899(+) (cytR) [Vibrio rhizosphaerae strain LMG 23790]
MATMKDVAQLAGVSTATVSRALMNPEKVSPTTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVAIVPDICDPYFTEIIRG
IEDAAVEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDASKPEQKNLPPMVMACEYAPELELPTVHIDN
LTSAFEVVNYLTQMGHKKIGEIAGPDSAALCHFRHQGYMQALRRAGITMNPAYHYKGDFSFEAGVKAIRLLLGLSDPPSA
VFCHNDMMAIGAIQEAKRLGARVPQDLSVVGFDDINFAQYCDPPLTTVSQPRYEIGRQAMLMMLEVLRGHDVRAGSRLLE
TKLVIRESVAAPRG

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=89301 OCV37_RS01235 WP_038178734.1 290895..291899(+) (cytR) [Vibrio rhizosphaerae strain LMG 23790]
ATGGCGACAATGAAGGATGTTGCTCAACTAGCGGGAGTGTCAACCGCGACCGTATCTAGGGCATTGATGAATCCCGAAAA
AGTGTCGCCAACGACAAGAAAACGGGTTGAAGATGCAGTTCTTGAAGCCGGATATTCTCCGAATTCACTGGCACGAAATT
TAAGACGTAACGAGTCGAAAACAATTGTTGCGATCGTTCCCGATATTTGTGACCCGTACTTTACTGAAATTATTCGTGGT
ATTGAGGATGCGGCTGTCGAGCATGGTTATTTAGTACTACTTGGTGATAGTGGGCAACAGAAGAAACGGGAAAGTTCTTT
TGTCAATTTGGTTTTCACCAAACAAGCCGACGGCATGTTACTTCTTGGTACCGATTTACCATTTGATGCCAGTAAACCGG
AGCAGAAAAATTTACCGCCGATGGTGATGGCCTGTGAGTACGCCCCCGAGCTGGAGTTGCCGACTGTCCATATTGATAAC
CTGACCTCGGCGTTTGAGGTCGTTAACTATCTCACTCAAATGGGCCATAAAAAGATTGGTGAGATTGCCGGTCCCGATTC
TGCTGCTCTGTGTCATTTCCGTCATCAAGGGTATATGCAGGCTTTAAGACGTGCCGGCATTACGATGAATCCTGCCTATC
ATTATAAAGGTGACTTCAGTTTTGAAGCCGGAGTAAAAGCGATTCGGCTCCTTTTAGGTTTGTCTGATCCACCGAGCGCC
GTTTTTTGTCACAACGATATGATGGCTATCGGGGCGATTCAGGAAGCGAAACGCTTAGGCGCGAGAGTCCCTCAGGACTT
ATCCGTAGTTGGTTTCGATGATATTAATTTTGCGCAGTATTGTGATCCACCGTTAACCACCGTTTCTCAGCCTCGATATG
AAATTGGCCGTCAGGCGATGCTGATGATGTTAGAAGTCCTTCGGGGACACGATGTACGTGCGGGCTCACGCCTGTTGGAA
ACAAAACTGGTGATTCGTGAAAGTGTTGCCGCTCCTCGCGGATGA

Domains

Predicted by InterproScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-329)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

87.651

99.401

0.871
  cytR Vibrio parahaemolyticus RIMD 2210633

84.985

99.701

0.847

Multiple sequence alignment