Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   R1018_RS13355 Genome accession   NZ_CP136819
Coordinates   2795064..2795687 (-) Length   207 a.a.
NCBI ID   WP_071258272.1    Uniprot ID   A0AAW7F0H9
Organism   Citrobacter koseri strain K616     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2790064..2800687
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R1018_RS13340 (R1018_13340) helD 2790305..2792359 (-) 2055 WP_058668974.1 DNA helicase IV -
  R1018_RS13345 (R1018_13345) - 2792483..2792929 (+) 447 WP_012132963.1 YccF domain-containing protein -
  R1018_RS13350 (R1018_13350) yccS 2792948..2795095 (+) 2148 WP_024130467.1 YccS family putative transporter -
  R1018_RS13355 (R1018_13355) sxy/tfoX 2795064..2795687 (-) 624 WP_071258272.1 TfoX/Sxy family DNA transformation protein Regulator
  R1018_RS13360 (R1018_13360) sulA 2795904..2796413 (+) 510 WP_012132966.1 SOS-induced cell division inhibitor SulA -
  R1018_RS13365 (R1018_13365) ompA 2796769..2797815 (+) 1047 WP_047463714.1 porin OmpA -
  R1018_RS13370 (R1018_13370) matP 2797890..2798342 (-) 453 WP_012132968.1 macrodomain Ter protein MatP -
  R1018_RS13375 (R1018_13375) - 2798528..2800288 (+) 1761 WP_071258273.1 Lon protease family protein -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 23941.62 Da        Isoelectric Point: 9.4100

>NTDB_id=892980 R1018_RS13355 WP_071258272.1 2795064..2795687(-) (sxy/tfoX) [Citrobacter koseri strain K616]
MKLRSYDKIYKSQEYLASLGTVHYRSLFGSYSLTIEDTVFAMVAEGELYLRACEQSVAYCVKHSPVWLTFMKRGRPVMLN
YYRVDESLWRDQQQLVLLSQYSLDAAIKEKRTRFSQRRLKNLPNVTFHLENLLHEAGINDENTLRILGAKMCWLRLRESN
KLLTVKTLYALEGAIAGVHEAALPAVRRQELAEWAQSLTPEHQKATA

Nucleotide


Download         Length: 624 bp        

>NTDB_id=892980 R1018_RS13355 WP_071258272.1 2795064..2795687(-) (sxy/tfoX) [Citrobacter koseri strain K616]
ATGAAATTACGTTCCTATGACAAGATCTATAAATCACAAGAATATTTAGCCTCTCTGGGCACGGTTCACTATCGTTCGCT
GTTTGGTAGCTACAGCCTGACAATCGAGGATACGGTGTTTGCGATGGTGGCTGAGGGAGAGCTATACCTGCGCGCCTGTG
AGCAAAGCGTCGCGTACTGCGTGAAGCATTCCCCTGTCTGGTTAACATTTATGAAACGTGGCCGTCCCGTTATGTTGAAT
TATTACCGGGTGGATGAAAGCTTATGGCGCGATCAACAACAGCTGGTGCTTTTATCGCAGTATTCGCTGGATGCAGCCAT
AAAAGAAAAACGTACCCGTTTTTCACAACGTCGATTGAAGAATCTGCCAAACGTAACGTTTCATCTGGAGAACCTTCTGC
ATGAGGCCGGAATTAATGATGAAAACACATTGCGAATACTCGGCGCAAAAATGTGTTGGCTGCGGCTAAGAGAGAGCAAT
AAGCTGCTGACGGTGAAAACTCTCTATGCGTTAGAAGGGGCGATTGCTGGCGTACATGAAGCGGCGCTCCCGGCGGTGCG
CCGCCAGGAGCTTGCTGAGTGGGCGCAGTCGCTTACGCCGGAGCACCAGAAGGCGACGGCGTGA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

71.921

98.068

0.705