Detailed information NTG0892885

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: ABDT56_RS20225
• Genome accession: NZ_CP152467
• Coordinates: 4123612..4124637 (-)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli strain Sel(aux star)
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 4118612..4129637

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABDT56_RS20195	zapB	4118696..4118941 (+)	246	WP_001296623.1	septal ring assembly protein ZapB	-
ABDT56_RS20200	rraA	4119026..4119511 (-)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
ABDT56_RS20205	menA	4119604..4120530 (-)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
ABDT56_RS20210	hslU	4120597..4121928 (-)	1332	WP_001293341.1	HslU--HslV peptidase ATPase subunit	-
ABDT56_RS20215	hslV	4121938..4122468 (-)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
ABDT56_RS20220	ftsN	4122561..4123520 (-)	960	WP_000068828.1	cell division protein FtsN	-
ABDT56_RS20225	cytR	4123612..4124637 (-)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
ABDT56_RS20230	priA	4124793..4126991 (-)	2199	WP_001301269.1	primosomal protein N'	Machinery gene
ABDT56_RS20235	rpmE	4127194..4127406 (+)	213	WP_000710769.1	50S ribosomal protein L31	-
ABDT56_RS20240	yiiX	4127467..4128075 (-)	609	WP_000797353.1	YiiX family permuted papain-like enzyme	-
ABDT56_RS20245	metJ	4128259..4128576 (-)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=892885 ABDT56_RS20225 WP_000644904.1 4123612..4124637(-) (cytR) [Escherichia coli strain Sel(aux star)]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=892885 ABDT56_RS20225 WP_000644904.1 4123612..4124637(-) (cytR) [Escherichia coli strain Sel(aux star)]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACCGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAGCTGGAG
CTGCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628