Detailed information    

insolico Bioinformatically predicted

Overview

Name   tpc   Type   Machinery gene
Locus tag   R1T10_RS08860 Genome accession   NZ_CP136807
Coordinates   1761151..1762149 (+) Length   332 a.a.
NCBI ID   WP_002226542.1    Uniprot ID   -
Organism   Neisseria meningitidis NMB     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context

Location: 1756151..1767149
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R1T10_RS08830 - 1756369..1757058 (-) 690 WP_002226537.1 DNA glycosylase -
  R1T10_RS08835 rsmA 1757270..1758049 (+) 780 WP_002226538.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA -
  R1T10_RS08840 - 1758222..1758950 (+) 729 WP_002217681.1 amino acid ABC transporter ATP-binding protein -
  R1T10_RS08845 - 1759023..1759382 (+) 360 WP_002226539.1 hypothetical protein -
  R1T10_RS08850 - 1759387..1759833 (+) 447 WP_002226540.1 protein YgfX -
  R1T10_RS08855 folC 1759864..1761138 (+) 1275 WP_002226541.1 bifunctional tetrahydrofolate synthase/dihydrofolate synthase -
  R1T10_RS08860 tpc 1761151..1762149 (+) 999 WP_002226542.1 cell division protein FtsN Machinery gene
  R1T10_RS08865 - 1762142..1762639 (+) 498 WP_002214153.1 CvpA family protein -
  R1T10_RS08870 - 1762636..1762806 (+) 171 WP_153308407.1 hypothetical protein -
  R1T10_RS08875 purF 1762951..1764495 (+) 1545 WP_002221269.1 amidophosphoribosyltransferase -
  R1T10_RS08880 greB 1764595..1765086 (+) 492 WP_002214159.1 transcription elongation factor GreB -
  R1T10_RS08885 - 1765145..1765771 (+) 627 WP_002221271.1 phosphoribosylanthranilate isomerase -

Sequence

Protein


Download         Length: 332 a.a.        Molecular weight: 35529.90 Da        Isoelectric Point: 10.1759

>NTDB_id=892866 R1T10_RS08860 WP_002226542.1 1761151..1762149(+) (tpc) [Neisseria meningitidis NMB]
MSENKHNEVLSGYEQLKRRNRRRLVTASCLVAASCILLAAALSSGPAEQTAGETSGVENKAAGAAQTPALKSAADKPQDL
AGEDKPSAADSEISEPENVGAPLVLINDRLEDSNIKGLEASEKLQQAETAKTAPKQAKQRAAEKVPATADSTDTVAVEKP
KRTAETKPQKAERTAKAKPKAKETKTAEKVADKPKTAAEKTKPDTAKSDSAVKEAKKADKAESKKTAEKDRSDGKKHETA
QKTDKADKTKTAEKEKSGKKAAIQAGYAEKERALSLQRKMKAAGIDSTITEIMTDNGKVYRVKSSNYKNARDAERDLNKL
RVHGIAGQVTNE

Nucleotide


Download         Length: 999 bp        

>NTDB_id=892866 R1T10_RS08860 WP_002226542.1 1761151..1762149(+) (tpc) [Neisseria meningitidis NMB]
ATGTCCGAAAACAAACACAACGAAGTCCTGAGCGGTTACGAACAACTCAAACGGCGCAACCGCCGCCGCCTCGTAACGGC
AAGTTGCCTGGTTGCCGCCTCCTGCATCCTGCTGGCAGCCGCCCTCAGTTCCGGCCCTGCCGAACAGACTGCCGGCGAAA
CAAGCGGCGTAGAAAACAAAGCGGCAGGTGCGGCACAAACCCCTGCCTTGAAATCCGCCGCCGACAAACCGCAGGACTTG
GCAGGCGAAGACAAGCCTTCTGCCGCCGACAGCGAAATCAGCGAGCCTGAAAACGTAGGCGCGCCGCTGGTGCTGATTAA
CGACCGCCTCGAAGACAGCAACATCAAAGGTTTGGAAGCATCCGAGAAACTGCAACAGGCAGAAACCGCCAAAACCGCAC
CGAAGCAGGCAAAACAACGCGCTGCCGAAAAAGTGCCGGCAACTGCCGACAGTACGGATACGGTAGCGGTTGAAAAACCG
AAACGCACTGCCGAAACAAAACCGCAAAAAGCAGAACGCACTGCCAAAGCCAAGCCCAAAGCCAAAGAAACCAAAACCGC
CGAAAAAGTTGCCGACAAACCGAAAACTGCCGCCGAAAAAACCAAACCGGATACGGCAAAATCCGACAGCGCGGTAAAAG
AAGCGAAAAAAGCCGACAAGGCTGAAAGCAAAAAAACAGCCGAAAAAGACCGTTCGGACGGCAAAAAACACGAAACGGCA
CAAAAAACCGACAAAGCGGACAAGACCAAAACCGCCGAGAAGGAAAAATCCGGTAAAAAAGCCGCCATTCAGGCAGGTTA
TGCCGAAAAAGAACGCGCCTTAAGCCTCCAGCGCAAAATGAAAGCGGCGGGTATCGATTCGACCATCACCGAAATTATGA
CCGACAACGGCAAAGTTTACCGCGTCAAATCAAGCAACTATAAAAACGCAAGGGATGCCGAACGCGATTTGAACAAATTG
CGCGTACACGGTATCGCCGGTCAGGTAACGAATGAATAA

Domains

Predicted by InterproScan.

SPOR domain (SPOR)

(259-330)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tpc Neisseria gonorrhoeae MS11

89.595

100

0.934