Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   R1T10_RS08390 Genome accession   NZ_CP136807
Coordinates   1672918..1674297 (-) Length   459 a.a.
NCBI ID   WP_002226490.1    Uniprot ID   -
Organism   Neisseria meningitidis NMB     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1667918..1679297
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R1T10_RS08375 recB 1668018..1671632 (+) 3615 WP_002226487.1 exodeoxyribonuclease V subunit beta Machinery gene
  R1T10_RS08380 - 1671671..1672031 (+) 361 Protein_1608 rhodanese-like domain-containing protein -
  R1T10_RS08385 - 1672163..1672642 (+) 480 WP_002226489.1 DUF302 domain-containing protein -
  R1T10_RS08390 radA 1672918..1674297 (-) 1380 WP_002226490.1 DNA repair protein RadA Machinery gene
  R1T10_RS08395 - 1674325..1674495 (+) 171 WP_153308406.1 hypothetical protein -
  R1T10_RS08400 hemE 1674483..1675547 (-) 1065 WP_002226491.1 uroporphyrinogen decarboxylase -
  R1T10_RS08405 - 1675622..1676839 (-) 1218 WP_002226492.1 heme biosynthesis protein HemY -
  R1T10_RS08410 - 1676836..1678110 (-) 1275 WP_002226493.1 uroporphyrinogen-III C-methyltransferase -
  R1T10_RS08415 - 1678185..1678946 (-) 762 WP_002232081.1 uroporphyrinogen-III synthase -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49547.06 Da        Isoelectric Point: 7.3293

>NTDB_id=892862 R1T10_RS08390 WP_002226490.1 1672918..1674297(-) (radA) [Neisseria meningitidis NMB]
MAKTLKTLYQCTECGGTSPKWQGKCPHCGEWNTLQESLAAPEPKNARFQSWAADTSTVQSLSAVTAAEVPRNPTGMGELD
RVLGGGLVDGAVILLGGDPGIGKSTLLLQTIAKMAQSRKVLYVSGEESAQQVALRAQRLELPTEGVNLLAEIRMEAIQTA
LKQHQPEVVVIDSIQTMYSDQITSAPGSVSQVRECAAQLTRMAKQMGIAMILVGHVTKDGAIAGPRVLEHMVDTVLYFEG
DQHSNYRMIRAIKNRFGAANELGVFAMTENGLKGVSNPSAIFLASYRDDTPGSCVLVTQEGSRPLLVEIQALVDDAHGFT
PKRLTVGLEQNRLAMLLAVLNRHGGIACFDQDVFLNAVGGVKIGEPAADLAVILAMLSSFRNRPMPEKTVVFGEIGLSGE
VRPVARGQERLKEAEKLGFKRAIVPKANMPRNAKEFPNLKIYGVSSLQEAIDICRDSRE

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=892862 R1T10_RS08390 WP_002226490.1 1672918..1674297(-) (radA) [Neisseria meningitidis NMB]
ATGGCAAAAACGCTTAAAACCCTTTACCAATGCACCGAATGCGGCGGCACTTCGCCGAAATGGCAAGGCAAATGCCCGCA
TTGCGGCGAGTGGAACACGCTTCAAGAAAGCTTAGCCGCGCCCGAGCCGAAAAACGCCCGCTTCCAATCTTGGGCGGCGG
ATACCTCGACCGTCCAATCCCTCTCCGCCGTTACCGCTGCCGAAGTGCCGCGCAACCCGACCGGTATGGGCGAACTCGAC
CGCGTATTGGGCGGCGGTTTGGTCGATGGCGCGGTCATCCTACTCGGCGGCGATCCCGGCATCGGCAAATCCACGCTGTT
GTTGCAAACCATCGCCAAAATGGCGCAAAGCCGCAAAGTGCTGTACGTTTCCGGCGAGGAATCCGCCCAACAAGTCGCCC
TGCGCGCGCAGCGTTTGGAACTGCCCACCGAAGGCGTGAACCTGCTTGCCGAAATCCGCATGGAAGCCATTCAGACGGCC
TTGAAACAGCATCAGCCCGAAGTCGTGGTTATCGATTCCATCCAAACCATGTATTCCGACCAAATCACTTCCGCCCCCGG
CTCCGTGTCGCAGGTGCGCGAGTGTGCAGCCCAACTGACGCGCATGGCGAAACAGATGGGCATCGCCATGATACTGGTCG
GACACGTGACCAAAGACGGCGCGATTGCCGGCCCGCGCGTGCTGGAACACATGGTTGATACCGTGCTGTATTTCGAGGGC
GACCAACATTCCAACTACCGCATGATACGCGCCATCAAAAACCGCTTCGGCGCGGCAAACGAACTGGGCGTGTTCGCGAT
GACGGAAAACGGTTTGAAAGGTGTGTCCAACCCGTCCGCCATCTTCCTCGCCAGCTACCGCGACGATACGCCCGGCTCGT
GCGTTTTGGTTACACAGGAAGGCAGCCGCCCGCTTTTGGTCGAAATTCAGGCATTGGTCGATGACGCGCACGGCTTCACG
CCCAAACGCCTCACCGTCGGACTGGAACAAAACCGTCTTGCGATGCTGCTTGCCGTGTTAAACCGACACGGCGGCATCGC
CTGTTTCGATCAGGATGTGTTCCTCAACGCCGTCGGCGGCGTGAAAATCGGCGAACCGGCGGCGGATTTGGCGGTCATCC
TCGCGATGCTTTCCAGCTTCCGCAACCGCCCTATGCCTGAAAAAACCGTGGTTTTCGGCGAAATCGGCTTAAGCGGCGAA
GTCCGCCCCGTCGCACGCGGGCAAGAGCGGCTCAAAGAAGCGGAAAAACTCGGCTTCAAACGCGCCATCGTTCCCAAAGC
CAATATGCCGCGCAACGCCAAAGAGTTTCCGAACCTGAAAATCTACGGCGTTTCGAGTTTGCAGGAAGCCATCGATATTT
GCCGTGACAGCAGGGAATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

Subunit ChlI of Mg-chelatase (ChlI)

(366-428)

AAA domain (AAA_25)

(80-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.33

99.129

0.499
  radA Streptococcus mitis NCTC 12261

47.672

98.257

0.468
  radA Streptococcus pneumoniae Rx1

47.345

98.475

0.466
  radA Streptococcus pneumoniae D39

47.345

98.475

0.466
  radA Streptococcus pneumoniae R6

47.345

98.475

0.466
  radA Streptococcus pneumoniae TIGR4

47.345

98.475

0.466
  radA Streptococcus mitis SK321

47.228

98.257

0.464