Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilJ   Type   Machinery gene
Locus tag   R1T10_RS07920 Genome accession   NZ_CP136807
Coordinates   1584956..1585930 (-) Length   324 a.a.
NCBI ID   WP_017201059.1    Uniprot ID   -
Organism   Neisseria meningitidis NMB     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1532642..1592205 1584956..1585930 within 0


Gene organization within MGE regions


Location: 1532642..1592205
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R1T10_RS07590 - 1532642..1532866 (+) 225 WP_002234261.1 AAA family ATPase -
  R1T10_RS07595 - 1532924..1532980 (+) 57 Protein_1458 hypothetical protein -
  R1T10_RS07600 - 1532993..1533286 (+) 294 WP_002214491.1 hypothetical protein -
  R1T10_RS07605 - 1533329..1533532 (+) 204 WP_002214489.1 hypothetical protein -
  R1T10_RS07610 - 1533708..1534856 (+) 1149 WP_025462963.1 cupin domain-containing protein -
  R1T10_RS07615 - 1535098..1535433 (+) 336 WP_014574212.1 hypothetical protein -
  R1T10_RS07620 - 1536026..1536361 (+) 336 WP_002214483.1 hypothetical protein -
  R1T10_RS07625 - 1536578..1538674 (+) 2097 WP_002244529.1 peptidase domain-containing ABC transporter -
  R1T10_RS07630 - 1538676..1539938 (+) 1263 WP_002214479.1 HlyD family efflux transporter periplasmic adaptor subunit -
  R1T10_RS07635 - 1540208..1541047 (-) 840 WP_002214477.1 hypothetical protein -
  R1T10_RS07640 - 1541088..1542095 (+) 1008 WP_017201051.1 IS5 family transposase -
  R1T10_RS07645 - 1542511..1542642 (+) 132 WP_002217434.1 hypothetical protein -
  R1T10_RS07650 - 1542639..1543007 (+) 369 WP_002217436.1 type II toxin-antitoxin system death-on-curing family toxin -
  R1T10_RS07655 - 1543023..1543193 (+) 171 WP_164728559.1 hypothetical protein -
  R1T10_RS07660 - 1543298..1543936 (+) 639 WP_002244527.1 DUF4760 domain-containing protein -
  R1T10_RS07665 - 1544295..1544531 (+) 237 WP_002217439.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein -
  R1T10_RS07670 - 1544533..1544880 (+) 348 WP_002217440.1 type II toxin-antitoxin system PemK/MazF family toxin -
  R1T10_RS07675 - 1544933..1545442 (-) 510 WP_002220734.1 hypothetical protein -
  R1T10_RS07680 - 1545454..1545927 (-) 474 WP_002220733.1 D-Ala-D-Ala carboxypeptidase family metallohydrolase -
  R1T10_RS07685 - 1546066..1546341 (-) 276 WP_002217443.1 hypothetical protein -
  R1T10_RS07690 - 1546338..1546763 (-) 426 WP_002220721.1 hypothetical protein -
  R1T10_RS07695 - 1546827..1547198 (-) 372 WP_002217445.1 hypothetical protein -
  R1T10_RS07700 - 1547266..1547472 (-) 207 WP_002217448.1 hypothetical protein -
  R1T10_RS07705 - 1547489..1547935 (-) 447 WP_002241437.1 hypothetical protein -
  R1T10_RS07710 - 1548006..1552271 (-) 4266 WP_002244526.1 phage tail protein -
  R1T10_RS07715 - 1552407..1553129 (-) 723 WP_002220716.1 tail assembly protein -
  R1T10_RS07720 - 1553126..1553881 (-) 756 WP_002244525.1 C40 family peptidase -
  R1T10_RS07725 - 1553878..1554600 (-) 723 WP_002217456.1 phage minor tail protein L -
  R1T10_RS07730 - 1554660..1554929 (-) 270 WP_002217457.1 phage tail protein -
  R1T10_RS07735 - 1554951..1558169 (-) 3219 WP_002224445.1 phage tail length tape measure family protein -
  R1T10_RS07740 - 1558162..1558434 (-) 273 WP_002220710.1 DUF1799 domain-containing protein -
  R1T10_RS07745 - 1558482..1558793 (-) 312 WP_002220709.1 phage tail assembly chaperone -
  R1T10_RS07750 - 1558857..1559498 (-) 642 WP_002220708.1 phage tail protein -
  R1T10_RS07755 - 1559530..1559949 (-) 420 WP_002244524.1 hypothetical protein -
  R1T10_RS07760 - 1559930..1560232 (-) 303 WP_002244523.1 hypothetical protein -
  R1T10_RS07765 - 1560225..1560452 (-) 228 WP_002220705.1 hypothetical protein -
  R1T10_RS07770 - 1560510..1562402 (-) 1893 WP_002220704.1 phage major capsid protein -
  R1T10_RS07775 - 1562383..1563945 (-) 1563 WP_002220703.1 phage portal protein -
  R1T10_RS07780 - 1563954..1564208 (-) 255 WP_002220702.1 hypothetical protein -
  R1T10_RS07785 - 1564195..1564581 (-) 387 WP_002220701.1 DUF3310 domain-containing protein -
  R1T10_RS07790 - 1564584..1564793 (-) 210 WP_002220700.1 hypothetical protein -
  R1T10_RS07795 - 1564810..1567656 (-) 2847 WP_002220699.1 primase-helicase family protein -
  R1T10_RS07800 - 1567771..1568118 (-) 348 WP_002220698.1 hypothetical protein -
  R1T10_RS07805 - 1568518..1569234 (+) 717 WP_002220696.1 helix-turn-helix transcriptional regulator -
  R1T10_RS07810 - 1569337..1569762 (+) 426 WP_002220695.1 hypothetical protein -
  R1T10_RS07815 - 1569993..1570193 (+) 201 WP_002219431.1 hypothetical protein -
  R1T10_RS07820 - 1570261..1570620 (+) 360 WP_002220694.1 hypothetical protein -
  R1T10_RS07825 - 1570645..1571499 (+) 855 WP_002220693.1 YfdQ family protein -
  R1T10_RS07830 - 1571571..1571786 (+) 216 WP_002220692.1 hypothetical protein -
  R1T10_RS07835 - 1571822..1572082 (+) 261 WP_002220690.1 hypothetical protein -
  R1T10_RS07840 - 1572079..1572372 (+) 294 WP_002220689.1 hypothetical protein -
  R1T10_RS07845 - 1572375..1572566 (+) 192 WP_002219435.1 type ISP restriction/modification enzyme -
  R1T10_RS07850 - 1572566..1572706 (+) 141 WP_002220688.1 hypothetical protein -
  R1T10_RS07855 - 1572703..1572912 (+) 210 WP_002220687.1 hypothetical protein -
  R1T10_RS07860 - 1572970..1573887 (-) 918 WP_002220686.1 KilA-N domain-containing protein -
  R1T10_RS07865 - 1574755..1575234 (-) 480 WP_002244521.1 DUF4760 domain-containing protein -
  R1T10_RS07870 - 1575670..1576050 (-) 381 WP_002220683.1 type II toxin-antitoxin system PemK/MazF family toxin -
  R1T10_RS07875 - 1576205..1577401 (-) 1197 WP_002224447.1 integrase arm-type DNA-binding domain-containing protein -
  R1T10_RS07890 yaaA 1577933..1578712 (-) 780 WP_002220681.1 peroxide stress protein YaaA -
  R1T10_RS07895 dapC 1578974..1580161 (-) 1188 WP_002222650.1 succinyldiaminopimelate transaminase -
  R1T10_RS07900 dut 1580237..1580689 (-) 453 WP_002226436.1 dUTP diphosphatase -
  R1T10_RS07905 - 1580832..1581257 (+) 426 Protein_1518 AzlC family ABC transporter permease -
  R1T10_RS07910 pilX 1583900..1584373 (-) 474 WP_002244519.1 PilX family type IV pilin Machinery gene
  R1T10_RS07915 pilK 1584378..1584977 (-) 600 WP_002244518.1 pilus assembly protein Machinery gene
  R1T10_RS07920 pilJ 1584956..1585930 (-) 975 WP_017201059.1 PilW family protein Machinery gene
  R1T10_RS07925 pilV 1585927..1586538 (-) 612 WP_002226442.1 type IV pilus modification protein PilV Machinery gene
  R1T10_RS07930 pilH 1586568..1587236 (-) 669 WP_017201061.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  R1T10_RS07935 dnaB 1587538..1588944 (-) 1407 WP_002220671.1 replicative DNA helicase -
  R1T10_RS07940 - 1589107..1589694 (+) 588 WP_002220670.1 superoxide dismutase -
  R1T10_RS07945 - 1591032..1591541 (-) 510 WP_002213852.1 isoprenylcysteine carboxyl methyltransferase family protein -
  R1T10_RS07950 - 1591873..1592205 (-) 333 WP_002226445.1 hypothetical protein -

Sequence

Protein


Download         Length: 324 a.a.        Molecular weight: 35604.38 Da        Isoelectric Point: 8.9689

>NTDB_id=892858 R1T10_RS07920 WP_017201059.1 1584956..1585930(-) (pilJ) [Neisseria meningitidis NMB]
MRRKMLNVPKGSYDGMKGFTIIEFLVAGLLSMIVLMAVGSSYFTSRKLNDAANERLAAQQDLRNAATLIVRDARMAGSFG
CFNMSEHTKDDIVDSSNQTQPASAKPGVKQENPLFSLKRSDMEQLIPVTESADIKYSGFTQRLNALVFQYGIDDLDASAE
TVVVSSCSKIAKPGKKISTLQEAKSALQITNDDKQNGNITRQRHVVNAYAVGRIAGEEGLFRFQLDDKGKWGNPQLLAKK
VRRMDVRYIYVSGCPEDDDAGKEETFKYTDKFDKSKNAVTPAGVEVLLSSGTDTKIAASSDNHIYAYRIDATIRGGNVCA
NRTL

Nucleotide


Download         Length: 975 bp        

>NTDB_id=892858 R1T10_RS07920 WP_017201059.1 1584956..1585930(-) (pilJ) [Neisseria meningitidis NMB]
ATGAGACGTAAAATGCTAAACGTACCAAAAGGCAGTTATGATGGTATGAAAGGTTTTACCATTATTGAATTTTTGGTTGC
GGGCCTGCTCAGTATGATTGTCCTGATGGCGGTCGGATCGAGTTACTTCACATCCCGGAAATTAAATGATGCGGCAAACG
AGCGTCTTGCCGCACAACAGGATTTGCGGAATGCGGCAACATTGATTGTCCGCGATGCAAGAATGGCGGGGAGCTTCGGT
TGTTTCAATATGTCCGAGCATACTAAAGACGATATTGTTGATTCAAGTAATCAAACTCAACCTGCCTCTGCAAAACCCGG
TGTCAAACAAGAAAATCCCCTTTTTTCCTTAAAAAGGAGCGACATGGAACAACTGATTCCCGTTACTGAATCCGCAGATA
TTAAATATTCGGGTTTTACCCAGCGCCTTAACGCATTGGTTTTCCAATACGGTATCGATGATCTTGATGCGAGTGCTGAG
ACTGTTGTAGTCAGCAGCTGTTCCAAAATAGCAAAACCGGGTAAGAAAATATCTACCTTGCAAGAAGCAAAGAGTGCATT
ACAGATTACTAATGATGATAAACAAAATGGAAATATCACCCGTCAAAGGCATGTGGTCAATGCCTATGCGGTCGGCAGGA
TTGCCGGTGAGGAAGGTTTGTTCCGCTTCCAATTGGATGATAAGGGCAAGTGGGGTAATCCTCAGTTGCTCGCGAAAAAG
GTTAGACGTATGGATGTGCGGTATATCTATGTTTCCGGCTGTCCTGAAGATGACGATGCCGGCAAAGAGGAAACATTCAA
ATATACGGATAAATTCGACAAATCCAAAAATGCTGTTACGCCCGCCGGGGTGGAGGTTTTATTGAGTAGCGGTACTGATA
CCAAGATTGCCGCTTCTTCAGACAATCATATTTATGCTTACCGTATCGATGCGACAATACGCGGGGGAAATGTATGCGCA
AACAGAACGCTTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilJ Neisseria gonorrhoeae MS11

76.22

100

0.772