Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   OCU56_RS10420 Genome accession   NZ_AP024900
Coordinates   2299400..2299915 (-) Length   171 a.a.
NCBI ID   WP_261873168.1    Uniprot ID   -
Organism   Vibrio rarus strain LMG 23674     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2294400..2304915
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU56_RS10395 rimM 2294582..2295112 (-) 531 WP_261873163.1 ribosome maturation factor RimM -
  OCU56_RS10400 rpsP 2295145..2295393 (-) 249 WP_261873164.1 30S ribosomal protein S16 -
  OCU56_RS10405 ffh 2295658..2297046 (-) 1389 WP_261873165.1 signal recognition particle protein -
  OCU56_RS10410 - 2297196..2297990 (+) 795 WP_261873166.1 inner membrane protein YpjD -
  OCU56_RS10415 - 2298070..2299332 (+) 1263 WP_261873167.1 HlyC/CorC family transporter -
  OCU56_RS10420 luxS 2299400..2299915 (-) 516 WP_261873168.1 S-ribosylhomocysteine lyase Regulator
  OCU56_RS10425 gshA 2299932..2301497 (-) 1566 WP_261873169.1 glutamate--cysteine ligase -
  OCU56_RS10430 - 2301716..2304556 (-) 2841 WP_390904867.1 insulinase family protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18718.40 Da        Isoelectric Point: 4.8083

>NTDB_id=89285 OCU56_RS10420 WP_261873168.1 2299400..2299915(-) (luxS) [Vibrio rarus strain LMG 23674]
MPLLDSFTVDHTKMHAPAVRVAKTMQTPSGDTITVFDLRFTQPNKDILSETGIHTLEHLYAGFMRNHLNGQSVEIIDISP
MGCRTGFYMSLIGSPSESDVASAWIASMQDVLKVEGQNKIPELNEYQCGTAAMHSLDEAKAIAKAILEAGVSVNKNDELA
LPEEMLKTLQV

Nucleotide


Download         Length: 516 bp        

>NTDB_id=89285 OCU56_RS10420 WP_261873168.1 2299400..2299915(-) (luxS) [Vibrio rarus strain LMG 23674]
ATGCCCCTATTAGATAGTTTTACCGTTGACCATACCAAAATGCACGCCCCTGCTGTTCGTGTTGCCAAAACAATGCAAAC
GCCAAGTGGTGATACCATTACCGTATTTGATCTTCGTTTTACACAACCCAATAAGGACATCCTTTCAGAAACGGGTATCC
ACACTTTAGAGCACCTTTACGCCGGTTTTATGCGTAACCATTTAAACGGCCAATCTGTAGAGATTATTGATATCTCTCCT
ATGGGATGTCGTACTGGCTTTTACATGAGTCTCATTGGTTCGCCATCAGAGTCGGATGTGGCAAGTGCGTGGATTGCATC
TATGCAAGATGTACTTAAAGTGGAAGGGCAAAATAAGATCCCTGAGCTTAACGAGTACCAATGTGGTACCGCCGCTATGC
ACTCACTCGATGAAGCTAAAGCCATTGCTAAAGCCATTTTAGAGGCGGGAGTATCGGTGAATAAAAATGATGAGCTAGCA
CTTCCTGAAGAGATGCTAAAAACACTGCAAGTTTAG

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

83.626

100

0.836

Multiple sequence alignment