Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ABDT56_RS04940 Genome accession   NZ_CP152467
Coordinates   1020362..1020991 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain Sel(aux star)     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1015362..1025991
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABDT56_RS04920 ycbZ 1015763..1017523 (-) 1761 WP_000156518.1 Lon protease family protein -
  ABDT56_RS04925 matP 1017709..1018161 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  ABDT56_RS04930 ompA 1018237..1019277 (-) 1041 WP_000750416.1 porin OmpA -
  ABDT56_RS04935 sulA 1019634..1020143 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  ABDT56_RS04940 sxy/tfoX 1020362..1020991 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ABDT56_RS04945 yccS 1020954..1023116 (-) 2163 WP_000875061.1 YccS family putative transporter -
  ABDT56_RS04950 yccF 1023126..1023572 (-) 447 WP_001261235.1 YccF domain-containing protein -
  ABDT56_RS04955 helD 1023695..1025749 (+) 2055 WP_001295354.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=892827 ABDT56_RS04940 WP_000839153.1 1020362..1020991(+) (sxy/tfoX) [Escherichia coli strain Sel(aux star)]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=892827 ABDT56_RS04940 WP_000839153.1 1020362..1020991(+) (sxy/tfoX) [Escherichia coli strain Sel(aux star)]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1