Detailed information NTG0892824

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: R0290_RS14540
• Genome accession: NZ_CP136803
• Coordinates: 3124636..3125781 (+)
• Length: 381 a.a.
• NCBI ID: WP_275905553.1
• Uniprot ID: -
• Organism: Burkholderia semiarida strain HNBS001
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3119636..3130781

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R0290_RS14510 (R0290_14505)	-	3120278..3120883 (+)	606	WP_059575641.1	50S ribosomal protein L25/general stress protein Ctc	-
R0290_RS14515 (R0290_14510)	pth	3121002..3121601 (+)	600	WP_060009005.1	aminoacyl-tRNA hydrolase	-
R0290_RS14520 (R0290_14515)	hisC	3121720..3122787 (+)	1068	WP_302107606.1	histidinol-phosphate transaminase	-
R0290_RS14525 (R0290_14520)	-	3122868..3123134 (-)	267	WP_006477774.1	YfhL family 4Fe-4S dicluster ferredoxin	-
R0290_RS14530 (R0290_14525)	coaD	3123194..3123691 (-)	498	WP_014895999.1	pantetheine-phosphate adenylyltransferase	-
R0290_RS14535 (R0290_14530)	rsmD	3123803..3124417 (-)	615	WP_124862546.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
R0290_RS14540 (R0290_14535)	pilA	3124636..3125781 (+)	1146	WP_275905553.1	signal recognition particle-docking protein FtsY	Machinery gene
R0290_RS14545 (R0290_14540)	maiA	3125841..3126485 (-)	645	WP_302107607.1	maleylacetoacetate isomerase	-
R0290_RS14550 (R0290_14545)	ybiB	3126666..3127637 (+)	972	WP_060312535.1	DNA-binding protein YbiB	-
R0290_RS14555 (R0290_14550)	leuA	3128016..3129662 (+)	1647	WP_059575628.1	2-isopropylmalate synthase	-
R0290_RS14560 (R0290_14555)	-	3129818..3130201 (-)	384	WP_059642650.1	nuclear transport factor 2 family protein	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 40534.29 Da
• Isoelectric Point: 4.7393

>NTDB_id=892824 R0290_RS14540 WP_275905553.1 3124636..3125781(+) (pilA) [Burkholderia semiarida strain HNBS001]
MFSFFKRFKKTQEPDPAESQSADAQQADEASDADAPPAAELPQASAQPAAPAVVMTVTPTNDGRDEVVETVEIVPPPQQD
ASAKKSWLARLKTGLAKTGSSITGVFVNTKIDEDLYEELETALLMSDAGVDATEYLLGALREKVRAGRLTDPQQVKDALH
DLLVELLAPLEKSLMLGRAQPLVMMIAGVNGAGKTTSIGKLAKHLQSFDQSVLLAAGDTFRAAAREQLAVWGERNNVTVV
QQESGDPAAVIFDAVSAARARKIDVMMADTAGRLPTQLHLMEELKKVKRVIAKAHDGAPHEVLLVIDANTGQNALTQVKA
FDDALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEKVEDLQPFSAVEFADALLG

Nucleotide

• Length: 1146 bp

>NTDB_id=892824 R0290_RS14540 WP_275905553.1 3124636..3125781(+) (pilA) [Burkholderia semiarida strain HNBS001]
ATGTTCAGTTTCTTCAAACGATTCAAGAAAACGCAGGAGCCCGATCCGGCGGAATCGCAATCGGCCGACGCGCAGCAAGC
GGACGAAGCGTCCGACGCCGACGCGCCACCCGCGGCCGAGCTGCCGCAGGCGAGTGCCCAACCGGCCGCGCCGGCCGTCG
TGATGACGGTCACGCCGACCAACGACGGCCGCGACGAAGTCGTCGAGACGGTCGAGATCGTCCCGCCGCCGCAGCAGGAC
GCCTCCGCGAAGAAGTCGTGGCTCGCACGCCTGAAAACGGGGCTCGCGAAGACGGGCTCGAGCATCACCGGCGTCTTCGT
CAACACGAAGATCGACGAAGACCTGTACGAGGAGCTCGAAACCGCGCTGCTGATGTCCGACGCGGGCGTCGACGCGACCG
AATACCTGCTCGGCGCGCTGCGCGAGAAGGTGCGCGCGGGCCGGCTGACCGATCCGCAGCAGGTGAAGGATGCGCTGCAC
GACCTGCTCGTCGAGCTGCTGGCGCCGCTCGAGAAATCGCTGATGCTCGGCCGCGCGCAGCCGCTCGTGATGATGATCGC
CGGCGTGAACGGCGCGGGCAAGACGACCAGCATCGGCAAGCTCGCGAAGCATCTGCAGAGCTTCGACCAGTCGGTGCTGC
TGGCCGCCGGCGACACGTTCCGCGCGGCGGCGCGCGAACAGCTGGCGGTCTGGGGCGAGCGCAACAACGTGACGGTCGTG
CAGCAGGAAAGCGGCGATCCGGCCGCGGTGATCTTCGACGCGGTCAGCGCCGCGCGCGCGCGCAAGATCGACGTGATGAT
GGCCGACACGGCCGGCCGCCTGCCGACGCAGCTGCACCTGATGGAAGAGCTGAAGAAGGTGAAGCGCGTGATCGCGAAGG
CGCACGACGGCGCGCCGCACGAGGTGCTGCTGGTGATCGACGCGAACACCGGCCAGAACGCGCTCACGCAGGTGAAGGCG
TTCGACGACGCGCTGGGCCTGACCGGCCTGATCGTCACGAAGCTCGACGGCACCGCGAAGGGCGGGATTCTCGCCGCGAT
CGCGCGGCAACGGCCGGTGCCCGTCTACTTCATCGGCGTCGGCGAGAAGGTCGAGGACCTGCAGCCGTTCAGCGCGGTGG
AATTCGCGGACGCGCTGCTGGGCTGA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (182-381)

• SRP54-type protein, helical bundle domain (SRP54_N) (99-161)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	54.087	100	0.591