Detailed information NTG0089282

Bioinformatically predicted

Overview

• Name: chiS
• Type: Regulator
• Locus tag: OCU56_RS10175
• Genome accession: NZ_AP024900
• Coordinates: 2239404..2242787 (+)
• Length: 1127 a.a.
• NCBI ID: WP_261873121.1
• Uniprot ID: -
• Organism: Vibrio rarus strain LMG 23674
• Function: chitin sensor (predicted from homology) Competence regulation

Genomic Context

Location: 2234404..2247787

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OCU56_RS10155	erpA	2235244..2235585 (-)	342	WP_261873117.1	iron-sulfur cluster insertion protein ErpA	-
OCU56_RS10160	hemL	2235784..2237070 (+)	1287	WP_261873118.1	glutamate-1-semialdehyde 2,1-aminomutase	-
OCU56_RS10165	-	2237179..2238264 (+)	1086	WP_261873119.1	AI-2E family transporter	-
OCU56_RS10170	rsmC	2238277..2239296 (+)	1020	WP_261873120.1	16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	-
OCU56_RS10175	chiS	2239404..2242787 (+)	3384	WP_261873121.1	response regulator	Regulator
OCU56_RS10180	-	2243365..2245038 (+)	1674	WP_261873122.1	ABC transporter substrate-binding protein	-
OCU56_RS10185	-	2245190..2246176 (+)	987	WP_261873123.1	ABC transporter permease	-
OCU56_RS10190	-	2246178..2247212 (+)	1035	WP_261873124.1	ABC transporter permease	-

Sequence

Protein

• Length: 1127 a.a.
• Molecular weight: 127755.78 Da
• Isoelectric Point: 5.1420

>NTDB_id=89282 OCU56_RS10175 WP_261873121.1 2239404..2242787(+) (chiS) [Vibrio rarus strain LMG 23674]
MSKYHSHPKFKRLKSTLMGAFLFVSLVPMLVIAFFFLQSHIEDLEEQSTTYLTSMRDGTTNQVTAYIKSLDSEVIGFVHS
ELAYASGGRFYGLIDSFRRLGANPQQSRHIGQQKYVLGSGDKVNKTTIKGTQTHLNVNRYRLLHTRYHSTYTSLLERSDF
DDIALVDLDGNVAYSVQKNGYYSTNLETGPYRDNELGRLFKRLKQHIKSEKDTLDEYNEIVLMSDFSKGLDGTDDREFVW
FAAPIIQQEYLHSYAFFRLPLSALAYLIEVDHENQTTISLIDQSHKLLVQTSETGAENNLSVASKALQGIEQVETYTNTA
NQNMIAAYAPIKVHNLKWAVIVETPENVAFVRVNKLYSLFLIIICSAVIVIVIGSHYLANFITRPLLKLTWAAERISAGD
LFENVEGTERKDEIGRLAVSFERMQRSVREKIELINKQNTELAYNLDTIATQNKELQQADKLKDEFLATTSHELRTPLHG
MIGVAQAIIGEAHGSIPASQRYQLEIIINSGHRLSNLVDDLLDYHKMQYGQLTLQAVPVSLSSASSLVIELSKHLIGEKP
VRIINQIDDSLPMVSADPQRLEQVLYNLVGNAMKFTPEGKIILTAEQDGEQLKIQIIDTGSGIPEDDLEHIFEPLIQGNS
SNYQQGTGLGLSISKQLITIMHGELSVTSQPLLGTTFTLTLPLASEQQLQTFNRDVDTAHYTRQNISFNEDTHTPPHNPD
GKVVMIADDEPVNLKILESFLHMEGYQVISANNGRQALDLIEQDKPDMLLLDIMMPELNGFEVCKHLRESYSYNELPIIM
LTALGQSEDKIKGFDYGANDYLIKPFNKQELSARIQVHLNASLSEQRKLENDYLNDQLSQREKVESLLLDTQDKLLAQLE
STPEAIICVNEAHKITFANKSALQLFQRSNEQIKRSQIEEFIAPKYLQFDQPHRSIDIDLFVAQTKQTIPCDIFTLPLET
GLKGMIIFNPDMDDSTSRVDNLEVALDALASYAFAGDKSQLEHLKNLGEEFADIVNMIDSDKDSKQQKMRQLLVDCMSEA
LDYWESHQGNTKFGFAEQSGLWRVYLDRSTLQTRTLDKYLRIETLPNTPRWRTVLNSLDYILANSHNENAQRAQLIERKE
QLQSLFS

Nucleotide

• Length: 3384 bp

>NTDB_id=89282 OCU56_RS10175 WP_261873121.1 2239404..2242787(+) (chiS) [Vibrio rarus strain LMG 23674]
ATGTCAAAATATCATTCACACCCAAAATTTAAACGCCTTAAAAGCACCTTAATGGGGGCTTTTTTATTCGTTAGCCTTGT
GCCAATGCTAGTTATTGCATTCTTTTTTCTTCAATCTCATATTGAAGACTTAGAAGAGCAAAGTACCACTTATCTCACTT
CAATGAGAGATGGCACAACCAATCAAGTCACCGCTTACATAAAAAGCCTCGATTCCGAAGTGATTGGCTTTGTGCACTCC
GAATTGGCCTATGCAAGTGGCGGGCGTTTTTATGGTTTGATTGATTCTTTTCGGCGCCTCGGGGCTAATCCGCAACAGTC
TCGACATATTGGGCAGCAAAAATATGTTTTAGGCTCTGGGGACAAAGTGAATAAAACCACTATAAAAGGCACCCAAACCC
ATCTCAACGTCAATCGTTATCGTCTGCTACACACTCGCTATCACTCTACTTACACAAGCCTATTAGAACGCTCAGATTTT
GATGATATTGCTCTCGTAGATCTTGACGGAAACGTCGCCTATTCGGTACAAAAAAACGGATACTACTCGACAAATTTAGA
AACAGGGCCATACCGTGATAATGAACTTGGCCGGCTATTTAAACGGTTAAAACAACACATTAAATCTGAAAAAGACACCT
TAGATGAATACAATGAAATTGTACTCATGAGTGATTTTTCCAAAGGGTTAGATGGAACAGATGATCGAGAATTTGTCTGG
TTTGCCGCTCCCATTATTCAGCAAGAATATCTACACAGCTACGCTTTCTTTCGCTTACCTTTATCAGCACTAGCTTACCT
CATTGAGGTTGATCATGAAAACCAGACCACTATCTCTCTCATTGACCAATCTCATAAATTACTAGTGCAAACCTCAGAAA
CGGGAGCCGAAAACAACCTATCGGTTGCGTCTAAAGCCTTGCAAGGTATAGAGCAAGTAGAAACTTATACCAATACAGCC
AATCAAAATATGATTGCGGCGTACGCACCTATTAAGGTACACAATTTAAAATGGGCAGTGATTGTTGAAACCCCAGAAAA
TGTTGCTTTTGTGCGCGTAAATAAACTTTATTCTCTGTTCTTAATCATTATATGCAGCGCCGTTATCGTCATCGTCATCG
GTTCACACTACTTAGCCAACTTTATTACTCGCCCTTTATTAAAACTCACTTGGGCCGCTGAGCGCATTTCTGCTGGGGAT
CTGTTCGAAAATGTCGAAGGCACTGAACGCAAAGATGAAATTGGCCGACTAGCGGTAAGCTTTGAACGAATGCAACGCTC
CGTGCGCGAAAAGATAGAACTGATCAATAAGCAAAATACAGAACTTGCTTACAACCTAGATACCATTGCTACACAAAATA
AAGAGTTACAACAAGCCGATAAGCTAAAAGATGAGTTTCTTGCCACCACCTCACATGAGTTAAGAACCCCTCTACACGGC
ATGATAGGCGTGGCTCAGGCCATTATTGGAGAAGCTCACGGAAGTATTCCAGCATCTCAACGCTATCAACTAGAAATTAT
TATAAATAGTGGGCATAGACTGTCTAATTTAGTCGATGATCTATTGGATTATCATAAGATGCAATACGGCCAGTTAACGT
TGCAAGCGGTACCGGTATCATTATCTTCTGCATCTAGCTTAGTTATTGAATTATCTAAACATCTTATTGGGGAAAAACCA
GTACGTATCATTAATCAAATTGATGATAGCTTACCTATGGTCAGCGCCGATCCTCAAAGGCTTGAGCAGGTTCTCTACAA
CCTAGTGGGTAATGCGATGAAGTTTACCCCGGAAGGAAAAATCATTCTGACCGCAGAGCAAGATGGAGAACAACTTAAGA
TCCAAATCATTGATACAGGTTCAGGAATACCCGAAGATGATCTTGAGCATATTTTCGAGCCGCTTATTCAAGGCAACTCA
TCCAATTACCAACAAGGGACAGGGCTTGGCTTATCCATTAGTAAGCAGTTGATTACCATCATGCACGGTGAGCTTAGTGT
CACCAGTCAACCCTTACTAGGTACGACTTTTACCCTCACCTTGCCACTGGCGAGCGAGCAACAATTACAAACGTTTAATC
GCGATGTGGATACGGCGCACTACACCCGACAAAACATCTCATTTAACGAAGACACCCATACTCCGCCACACAATCCTGAT
GGCAAAGTGGTCATGATTGCCGATGATGAACCGGTCAACCTTAAAATCCTAGAAAGCTTTTTGCACATGGAAGGGTATCA
AGTGATTAGCGCCAATAATGGACGCCAAGCACTTGATCTTATTGAACAAGACAAGCCTGATATGCTATTGCTAGATATCA
TGATGCCAGAACTCAATGGCTTTGAGGTGTGTAAGCACTTACGTGAGTCCTACAGTTATAACGAACTGCCGATAATCATG
CTAACCGCCCTTGGTCAAAGCGAAGACAAAATTAAAGGTTTTGATTATGGTGCGAACGACTATTTAATTAAGCCATTTAA
TAAACAGGAATTATCCGCGCGTATTCAAGTACACTTAAATGCCAGTCTCTCAGAACAACGTAAACTAGAAAATGATTATC
TAAATGATCAATTAAGCCAAAGAGAAAAAGTAGAATCATTACTTTTAGACACTCAAGACAAATTATTAGCCCAACTCGAG
AGCACTCCAGAAGCGATCATCTGTGTTAATGAAGCGCATAAAATAACCTTTGCTAACAAAAGTGCCTTACAGCTATTCCA
GCGCTCTAATGAACAAATAAAACGCTCGCAAATCGAAGAGTTTATTGCCCCCAAATATCTACAATTTGATCAACCGCATC
GCAGTATTGATATCGATCTTTTTGTTGCTCAAACCAAGCAGACCATCCCTTGTGACATTTTCACCCTCCCATTAGAAACG
GGGCTTAAAGGGATGATTATCTTTAATCCAGATATGGATGACAGCACTTCACGAGTAGACAACCTTGAAGTGGCTCTAGA
CGCGCTAGCAAGCTATGCCTTTGCCGGTGATAAATCCCAATTAGAACACCTAAAGAACTTAGGTGAAGAGTTTGCTGACA
TTGTGAATATGATTGACAGTGATAAAGACAGTAAGCAGCAAAAAATGCGACAACTGTTAGTGGATTGCATGTCAGAGGCA
TTGGATTATTGGGAGAGCCACCAAGGAAATACTAAGTTTGGATTTGCTGAGCAAAGTGGCTTGTGGCGCGTTTATTTAGA
CAGAAGCACACTGCAAACACGCACTCTTGATAAGTACTTAAGAATTGAAACCCTGCCCAACACGCCACGTTGGCGCACCG
TTCTTAACTCTTTAGATTACATTCTTGCCAATAGCCATAATGAAAATGCTCAAAGAGCACAACTCATCGAACGAAAAGAG
CAACTGCAAAGCTTATTTTCTTAA

Domains

Predicted by InterproScan.

• HAMP domain (HAMP) (378-429)

• His Kinase A (phospho-acceptor) domain (HisKA) (463-529)

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (577-684)

• Response regulator receiver domain (Response_reg) (724-836)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
chiS	Vibrio cholerae strain A1552	54.369	100	0.547