Detailed information NTG0089278

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: OCU56_RS06015
• Genome accession: NZ_AP024900
• Coordinates: 1264773..1266188 (-)
• Length: 471 a.a.
• NCBI ID: WP_261874615.1
• Uniprot ID: -
• Organism: Vibrio rarus strain LMG 23674
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1259773..1271188

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OCU56_RS05985	-	1259828..1260427 (+)	600	WP_261874610.1	class I SAM-dependent methyltransferase	-
OCU56_RS05990	ihfA	1260937..1261239 (+)	303	WP_261874781.1	integration host factor subunit alpha	-
OCU56_RS05995	purT	1261320..1262510 (-)	1191	WP_261874611.1	formate-dependent phosphoribosylglycinamide formyltransferase	-
OCU56_RS06000	cdd	1262656..1263549 (-)	894	WP_261874612.1	cytidine deaminase	-
OCU56_RS06005	-	1263727..1264404 (-)	678	WP_261874613.1	LrgB family protein	-
OCU56_RS06010	-	1264406..1264768 (-)	363	WP_261874614.1	CidA/LrgA family protein	-
OCU56_RS06015	sbcB	1264773..1266188 (-)	1416	WP_261874615.1	exodeoxyribonuclease I	Machinery gene
OCU56_RS06020	-	1266594..1270976 (-)	4383	WP_261874616.1	SslE/AcfD family lipoprotein zinc metalloprotease	-

Sequence

Protein

• Length: 471 a.a.
• Molecular weight: 54002.70 Da
• Isoelectric Point: 6.6313

>NTDB_id=89278 OCU56_RS06015 WP_261874615.1 1264773..1266188(-) (sbcB) [Vibrio rarus strain LMG 23674]
MQMDQPTFFFFDYETWGVSPAKDRPCQFAGVRTDADLNVIGEPLVIYCRPPADYLPTPEAALVTGITPQKAMQEGLSEPE
FIAAIHQQMSRANTCTLGYNSVRFDDEVTRYTCYRNFIEPYEWSYKNGNSRWDLLDVMRACHALRPAGIEWPKNDDGQTS
FRLEHLSQANGIEHSNAHDAMADVYATIEMAKKVKLAQPKLFDFFYKHRGKQKLNTLIDVVTMAPLVHVSGMLSQQHLKT
ALVAPVGWTATKALIAVDLTQDISPLIDLNAEQIKARLYTKRDDLEPDQLPIPVKLIHLNKCPILAPIGVLTAEATQRTQ
IDKQQCLNNQQALLQHPQIREKLDRVFAEPRTFVTNDNVDEQLYNGFFSPSDKAQMQIIRQAKPEVLGALDIQVSDQRIA
PLLFNFRARNYFHTLTDQEQKQWLRYCRDKFEKELPNYMLNLENLVSQHQGDERKVKIIRALYTYVTQLVS

Nucleotide

• Length: 1416 bp

>NTDB_id=89278 OCU56_RS06015 WP_261874615.1 1264773..1266188(-) (sbcB) [Vibrio rarus strain LMG 23674]
ATGCAAATGGACCAACCCACATTCTTTTTCTTTGATTATGAAACCTGGGGGGTCAGTCCTGCTAAAGACAGACCTTGCCA
GTTTGCAGGTGTGCGTACCGATGCCGATCTGAATGTCATAGGCGAGCCGTTGGTCATTTATTGTCGCCCTCCAGCCGACT
ACTTACCCACCCCTGAAGCGGCACTGGTGACAGGGATCACCCCGCAAAAAGCGATGCAAGAGGGTCTTTCTGAACCTGAG
TTTATCGCCGCAATTCACCAACAAATGAGCCGTGCCAATACCTGTACCCTTGGCTATAACAGTGTTCGCTTTGATGATGA
AGTGACCCGCTATACCTGTTATCGAAACTTTATAGAACCTTACGAGTGGAGCTATAAAAATGGCAACTCACGATGGGATC
TTCTCGATGTGATGCGCGCTTGTCACGCCTTGCGCCCCGCAGGGATTGAGTGGCCAAAAAATGACGATGGGCAAACCAGC
TTTCGTTTAGAGCACCTTTCGCAAGCAAACGGCATCGAACACAGTAATGCTCATGACGCCATGGCCGATGTATATGCCAC
TATAGAGATGGCAAAAAAGGTCAAACTTGCTCAACCTAAACTGTTTGATTTTTTCTATAAGCACAGAGGCAAACAAAAGC
TCAACACATTAATAGATGTTGTGACTATGGCGCCTTTAGTGCATGTCTCTGGAATGTTAAGCCAACAACACTTAAAGACG
GCGTTAGTGGCGCCTGTAGGGTGGACCGCCACCAAGGCACTCATTGCTGTTGATCTCACCCAAGATATCAGCCCGCTAAT
TGATTTGAACGCCGAACAAATCAAAGCACGCCTTTATACCAAACGAGATGATCTTGAACCGGATCAGTTACCTATTCCCG
TAAAACTGATCCACCTGAACAAGTGCCCTATTTTGGCCCCTATTGGTGTGTTAACCGCTGAGGCAACCCAGCGTACTCAA
ATTGATAAACAGCAGTGTTTAAATAACCAACAAGCGTTATTACAGCACCCGCAAATTAGAGAAAAGCTCGATCGAGTATT
TGCTGAACCTCGAACCTTTGTCACCAATGACAATGTCGATGAGCAATTGTACAACGGTTTTTTCTCACCTTCAGACAAAG
CGCAAATGCAGATCATTCGCCAAGCTAAGCCTGAAGTGTTAGGAGCCCTCGACATTCAAGTGTCCGATCAAAGAATCGCT
CCATTACTGTTTAATTTTAGAGCAAGAAATTACTTCCATACTTTAACCGATCAAGAACAGAAACAATGGTTGCGTTACTG
TAGAGATAAGTTCGAGAAAGAGCTACCAAATTACATGTTAAACTTAGAAAACTTGGTCTCTCAACATCAAGGTGATGAGC
GCAAAGTGAAGATTATTCGTGCGCTTTACACTTACGTTACACAATTGGTTTCTTAA

Domains

Predicted by InterproScan.

• Exonuclease C-terminal (Exonuc_X-T_C) (209-467)

• Exonuclease (RNase_T) (10-188)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	65.393	100	0.654