Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   RYQ61_RS06515 Genome accession   NZ_CP136799
Coordinates   1259200..1259913 (-) Length   237 a.a.
NCBI ID   WP_014829589.1    Uniprot ID   A0AAE8G0A0
Organism   Streptococcus intermedius strain XH2169     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1254200..1264913
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RYQ61_RS06500 (RYQ61_06500) - 1254721..1255845 (+) 1125 WP_003073569.1 AI-2E family transporter -
  RYQ61_RS06505 (RYQ61_06505) - 1256070..1257716 (+) 1647 WP_021003018.1 phosphoenolpyruvate carboxykinase (ATP) -
  RYQ61_RS06510 (RYQ61_06510) - 1257805..1259145 (+) 1341 WP_003078229.1 hemolysin family protein -
  RYQ61_RS06515 (RYQ61_06515) treR 1259200..1259913 (-) 714 WP_014829589.1 trehalose operon repressor Regulator
  RYQ61_RS06520 (RYQ61_06520) treP 1260092..1262104 (+) 2013 WP_020998954.1 PTS system trehalose-specific EIIBC component -
  RYQ61_RS06525 (RYQ61_06525) treC 1262272..1263915 (+) 1644 WP_117276603.1 alpha,alpha-phosphotrehalase -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27753.84 Da        Isoelectric Point: 8.9546

>NTDB_id=892734 RYQ61_RS06515 WP_014829589.1 1259200..1259913(-) (treR) [Streptococcus intermedius strain XH2169]
MKKYEQIFKLLKQDILNETYQIDDYLPSEHELVQTYKVSRDTIRKSLDLLQKAELIQKIRGQGSKVIKQAQIDFPVSNLT
SYQELVQQHGINSKTNLIQLEKITVDKKLSNLTGFPEYRLVWRIVRQRVVDDVASVLDIDYLDKTLVPSLTREIAEQSIY
AYLEEELGLRIAYAQKEITIDPATNRDQILMDIGTDQHVVSVKSKVYLADGQQFQFTDSRHKLEKFRFIDFAKRQKR

Nucleotide


Download         Length: 714 bp        

>NTDB_id=892734 RYQ61_RS06515 WP_014829589.1 1259200..1259913(-) (treR) [Streptococcus intermedius strain XH2169]
ATGAAAAAATATGAACAAATTTTCAAACTCCTAAAACAGGATATTCTAAATGAAACATATCAGATCGATGATTATCTCCC
TAGTGAACACGAACTCGTACAAACTTACAAAGTCAGTCGTGACACCATTCGTAAGTCACTTGACTTACTTCAAAAAGCAG
AGCTCATCCAAAAAATAAGAGGACAAGGTTCTAAAGTAATCAAACAAGCACAGATTGATTTTCCTGTCTCCAACCTGACT
AGCTACCAAGAACTCGTGCAGCAGCATGGAATAAATTCTAAAACTAATCTCATCCAATTAGAGAAAATTACAGTTGATAA
AAAATTATCTAATCTCACTGGTTTTCCTGAATATCGTCTGGTATGGCGAATTGTCCGCCAAAGAGTAGTCGATGACGTCG
CTTCTGTTCTAGATATTGATTATCTTGATAAAACTCTTGTCCCTTCCTTAACTAGAGAAATAGCAGAACAATCGATTTAT
GCTTATTTAGAAGAAGAATTAGGACTGCGCATTGCCTATGCCCAAAAAGAAATTACAATTGATCCAGCTACAAACCGTGA
CCAAATCTTGATGGATATCGGAACTGACCAGCATGTCGTTTCTGTCAAATCCAAAGTTTACCTTGCAGATGGACAACAAT
TTCAATTTACAGATAGTCGCCATAAACTCGAAAAATTCCGTTTTATTGACTTTGCTAAGCGACAAAAACGCTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(90-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

63.559

99.578

0.633