Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   RYQ61_RS05770 Genome accession   NZ_CP136799
Coordinates   1106051..1106782 (+) Length   243 a.a.
NCBI ID   WP_117276654.1    Uniprot ID   -
Organism   Streptococcus intermedius strain XH2169     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1101051..1111782
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RYQ61_RS05740 (RYQ61_05740) - 1101389..1102828 (+) 1440 WP_117276657.1 NCS2 family permease -
  RYQ61_RS05745 (RYQ61_05745) tsaE 1103166..1103606 (+) 441 WP_003073850.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  RYQ61_RS05750 (RYQ61_05750) - 1103599..1104120 (+) 522 WP_003073848.1 GNAT family N-acetyltransferase -
  RYQ61_RS05755 (RYQ61_05755) brpA 1104128..1105231 (+) 1104 WP_003073846.1 biofilm formation/cell division transcriptional regulator BrpA -
  RYQ61_RS05760 (RYQ61_05760) - 1105275..1105562 (-) 288 WP_117276656.1 hypothetical protein -
  RYQ61_RS05765 (RYQ61_05765) - 1105572..1105982 (-) 411 WP_117276655.1 HIT family protein -
  RYQ61_RS05770 (RYQ61_05770) pptA 1106051..1106782 (+) 732 WP_117276654.1 ABC transporter ATP-binding protein Regulator
  RYQ61_RS05775 (RYQ61_05775) - 1106779..1107825 (+) 1047 WP_117276653.1 ABC transporter permease -
  RYQ61_RS05780 (RYQ61_05780) ccrZ 1107876..1108673 (+) 798 WP_003073837.1 cell cycle regulator CcrZ -
  RYQ61_RS05785 (RYQ61_05785) trmB 1108670..1109305 (+) 636 WP_003078354.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  RYQ61_RS05790 (RYQ61_05790) - 1109705..1110397 (+) 693 WP_125394215.1 VIT family protein -
  RYQ61_RS05795 (RYQ61_05795) rimP 1110609..1111097 (+) 489 WP_003070356.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27087.58 Da        Isoelectric Point: 4.5977

>NTDB_id=892725 RYQ61_RS05770 WP_117276654.1 1106051..1106782(+) (pptA) [Streptococcus intermedius strain XH2169]
MLEIKGLTGGYINIPVLKDISFTVENGELVGLIGLNGAGKSTTINEIIGLLTPYKGEILIDGAKLQDNPIVYRKKIGFIP
ETPSLYEELTLREHIETVAMAYDVDQEVAFARVEQLLTKFRLKEKLDWFPVHFSKGMKQKVMIICAFVVDPSLFIVDEPF
LGLDPVAIADLIELLKDEKTKGKSILMSTHVLDSAERMCDSFVILHKGEIRAKGNLSELQSEFSMPEANLNEIYLALTEE
ASL

Nucleotide


Download         Length: 732 bp        

>NTDB_id=892725 RYQ61_RS05770 WP_117276654.1 1106051..1106782(+) (pptA) [Streptococcus intermedius strain XH2169]
ATGTTAGAAATAAAAGGGCTTACAGGCGGATATATAAATATCCCTGTTTTAAAAGATATCAGTTTCACGGTAGAAAATGG
TGAGCTGGTGGGCTTAATTGGTTTGAATGGTGCTGGAAAGTCTACAACAATCAATGAAATTATTGGACTTTTAACTCCTT
ATAAAGGGGAAATTTTAATTGACGGCGCTAAACTGCAAGATAATCCCATAGTTTATCGTAAGAAAATTGGATTTATTCCA
GAGACCCCTAGTTTATATGAGGAATTGACTTTAAGAGAGCACATTGAAACAGTTGCTATGGCTTATGATGTCGATCAAGA
GGTAGCTTTTGCGCGCGTGGAACAATTATTGACCAAGTTTCGCTTGAAAGAAAAATTGGATTGGTTCCCCGTTCACTTTT
CAAAGGGAATGAAGCAAAAAGTCATGATTATTTGCGCCTTTGTAGTTGATCCGAGTCTCTTTATCGTGGATGAGCCATTT
TTGGGACTCGATCCAGTAGCGATTGCTGATTTGATAGAGCTTTTGAAAGATGAAAAGACGAAAGGCAAGTCTATCCTGAT
GAGTACGCATGTGTTGGACTCAGCAGAAAGAATGTGTGATTCATTCGTGATTTTGCACAAGGGGGAAATCCGAGCGAAAG
GTAACTTATCAGAGTTGCAATCAGAATTTTCTATGCCAGAAGCTAACCTGAATGAGATCTATCTGGCATTGACAGAAGAG
GCAAGTCTATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus thermophilus LMD-9

70.711

98.354

0.695
  pptA Streptococcus salivarius strain HSISS4

70.293

98.354

0.691