Detailed information NTG0892722

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: RYQ61_RS04770
• Genome accession: NZ_CP136799
• Coordinates: 912219..914648 (+)
• Length: 809 a.a.
• NCBI ID: WP_102568141.1
• Uniprot ID: -
• Organism: Streptococcus intermedius strain XH2169
• Function: degradation of ComW (predicted from homology) Competence regulation

Genomic Context

Location: 907219..919648

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RYQ61_RS04740 (RYQ61_04740)	-	907733..908518 (+)	786	WP_117276483.1	hypothetical protein	-
RYQ61_RS04750 (RYQ61_04750)	rpsB	909160..909942 (+)	783	WP_003074779.1	30S ribosomal protein S2	-
RYQ61_RS04755 (RYQ61_04755)	tsf	910025..911068 (+)	1044	WP_003074777.1	translation elongation factor Ts	-
RYQ61_RS04760 (RYQ61_04760)	-	911145..911495 (-)	351	WP_009567828.1	hypothetical protein	-
RYQ61_RS04765 (RYQ61_04765)	-	911754..912215 (+)	462	WP_003077510.1	CtsR family transcriptional regulator	-
RYQ61_RS04770 (RYQ61_04770)	clpC	912219..914648 (+)	2430	WP_102568141.1	ATP-dependent Clp protease ATP-binding subunit	Regulator
RYQ61_RS04775 (RYQ61_04775)	-	914695..915135 (+)	441	WP_003074768.1	GNAT family N-acetyltransferase	-
RYQ61_RS04780 (RYQ61_04780)	dusB	915205..916176 (-)	972	WP_162885568.1	tRNA dihydrouridine synthase DusB	-
RYQ61_RS04785 (RYQ61_04785)	hslO	916163..917035 (-)	873	WP_041823105.1	Hsp33 family molecular chaperone HslO	-
RYQ61_RS04790 (RYQ61_04790)	-	917244..918515 (-)	1272	WP_102568140.1	toxic anion resistance protein	-
RYQ61_RS04795 (RYQ61_04795)	-	918534..919352 (-)	819	WP_102568139.1	hypothetical protein	-

Sequence

Protein

• Length: 809 a.a.
• Molecular weight: 90109.38 Da
• Isoelectric Point: 6.0573

>NTDB_id=892722 RYQ61_RS04770 WP_102568141.1 912219..914648(+) (clpC) [Streptococcus intermedius strain XH2169]
MKYSKALTESIESAQLLASHFETDYLESWQLLIAMANNPYSVAGSVLNDYPLEIDDFEKAAFHITGKVYQQEGDFTIWPF
SYRMKVLFLTAEQIAGAVHANNLGTEHILLAMLFDQGSLAARILEFIGFSYEDKEGVLRMTDLRKNLEHKASWNKEDLKA
IRHLNKSAAATRQTMANMMGMPPATSGGLEDYTRDLTEMAHMGLLEPVIGRDKEISRILQILSRKTKNNPVLVGDAGVGK
TALALGLAQRVADGQVPNELAKMRVLELDLMNVVAGTRFRGDFEERMNNIINDIEADGHVILFIDELHTIMGSGSGIDST
LDAANILKPALAKGTLRTIGATTQEEYQKYIEKDAALSRRFAKVTIEEPTVVDSIAILQGLKKSYEDHHKVVITDSAIEM
AVKYAHRYLTSKHLPDSAIDLLDEAAARVQNKSPQNHVKAELSAADEALMAGDWNKVDTLLEKESQPIVYKLRVKDEDVL
ATLSSLSGIPVQKLTQTDAKKYLNLEKELHKRVIGQNEAISAISRAIRRNQSGIRTSKRPIGSFLFLGPTGVGKTELAKA
LAEVLFDDETALIRFDMSEYMEKFAASRLNGAPPGYVGYEEGGELTEKVRNRPYSVLLFDEVEKAHPDIFNVLLQVLDDG
VLTDSKGRKVDFSNTIIIMTSNLGATSLRDDKTVGFGARDVRFDHENMEKRMMEELKKAYRPEFINRIDEKVVFHSLTSE
DMQEVVKIMVQPLISSLAEKGIKLKFQPSALKLLAQEGYDPEMGARPLRRILQTRVEDHLSELLLAGELKTGQSLKVGVK
AGKLKFEVL

Nucleotide

• Length: 2430 bp

>NTDB_id=892722 RYQ61_RS04770 WP_102568141.1 912219..914648(+) (clpC) [Streptococcus intermedius strain XH2169]
ATGAAATATTCAAAAGCTTTGACAGAAAGTATTGAATCAGCACAGTTATTAGCAAGTCATTTTGAAACGGATTATTTAGA
GTCTTGGCAGCTGTTGATTGCTATGGCAAATAATCCTTATAGTGTTGCTGGTTCAGTTTTAAATGATTACCCACTTGAAA
TTGATGATTTTGAAAAGGCAGCTTTTCATATCACGGGGAAAGTCTATCAACAAGAGGGAGACTTTACTATTTGGCCGTTT
TCTTATCGCATGAAAGTGCTATTTTTGACTGCTGAACAAATTGCAGGGGCGGTTCATGCTAATAATCTTGGGACAGAGCA
TATATTGCTAGCTATGTTATTTGACCAAGGAAGCTTGGCAGCGCGTATTCTTGAATTTATTGGTTTTAGTTACGAAGATA
AAGAAGGTGTTTTGCGCATGACAGATCTGCGGAAAAATTTAGAGCATAAGGCCAGCTGGAATAAAGAGGATTTAAAGGCT
ATTCGTCACCTAAATAAAAGTGCTGCAGCAACAAGACAAACGATGGCTAATATGATGGGAATGCCTCCTGCAACCAGTGG
CGGACTAGAAGATTATACTCGTGATCTAACTGAAATGGCTCATATGGGCCTTTTAGAACCGGTCATTGGGCGGGATAAAG
AGATTTCTCGCATACTTCAGATTTTAAGTCGTAAGACAAAAAACAATCCGGTTTTGGTAGGAGATGCAGGAGTTGGGAAG
ACAGCATTAGCTCTGGGTTTGGCGCAACGTGTGGCAGATGGTCAAGTTCCAAATGAGCTTGCAAAGATGAGAGTTTTAGA
GCTAGATTTAATGAATGTGGTGGCTGGAACTCGTTTTCGTGGTGATTTTGAAGAACGGATGAACAATATTATCAATGATA
TTGAAGCAGATGGGCATGTTATTCTCTTCATTGATGAGCTTCATACCATTATGGGGTCTGGCAGCGGGATTGACTCGACA
TTAGATGCAGCAAATATTCTCAAGCCGGCTTTGGCTAAAGGAACGCTCAGAACGATCGGTGCCACAACACAAGAAGAGTA
CCAAAAATATATCGAAAAAGATGCAGCTCTTTCACGAAGATTTGCCAAGGTTACTATTGAAGAACCAACGGTAGTTGACA
GCATTGCTATTTTACAGGGACTCAAGAAAAGTTATGAAGATCACCACAAGGTCGTGATTACGGATTCGGCAATTGAGATG
GCTGTTAAGTATGCGCATCGTTACCTGACTAGTAAACATCTACCTGACTCAGCGATTGACTTGCTAGACGAAGCTGCTGC
AAGGGTACAAAATAAAAGCCCGCAAAATCACGTAAAAGCAGAATTGAGTGCAGCAGATGAGGCTTTAATGGCAGGCGATT
GGAACAAAGTTGATACGTTGTTGGAGAAAGAGAGTCAGCCAATTGTTTATAAATTAAGAGTGAAAGACGAGGATGTTTTA
GCAACACTCAGCAGTTTATCAGGTATTCCTGTGCAAAAGTTGACACAAACAGATGCGAAGAAATACCTCAATTTAGAAAA
GGAGTTACACAAACGAGTTATCGGGCAAAATGAAGCAATTTCTGCTATTAGTCGAGCGATTCGGCGCAATCAATCCGGTA
TCCGCACTAGCAAGCGCCCAATTGGCTCCTTTCTGTTCTTAGGGCCAACTGGGGTCGGAAAAACTGAGCTAGCTAAGGCT
TTGGCAGAAGTTCTCTTTGATGACGAAACAGCGTTAATTCGTTTTGATATGTCCGAATACATGGAGAAATTTGCTGCTAG
TCGTCTCAATGGAGCACCTCCAGGCTATGTTGGTTATGAAGAAGGGGGAGAATTAACTGAAAAGGTGCGTAATCGTCCTT
ACTCTGTGCTCCTCTTTGATGAGGTAGAAAAAGCACATCCTGATATTTTCAATGTGCTGCTCCAAGTCTTAGATGACGGG
GTTCTGACGGATAGCAAGGGCCGTAAGGTAGATTTTTCCAATACTATTATCATTATGACCAGCAATCTTGGTGCGACAAG
TTTACGGGACGATAAGACGGTTGGGTTCGGAGCAAGAGATGTTCGCTTTGATCATGAAAATATGGAAAAACGAATGATGG
AAGAGCTAAAGAAAGCTTATCGTCCAGAATTTATTAACCGAATTGACGAAAAGGTTGTTTTTCACAGTTTGACTAGCGAA
GACATGCAGGAAGTGGTGAAAATTATGGTGCAACCGCTCATTTCTAGTCTTGCAGAAAAAGGAATTAAACTCAAATTCCA
ACCGAGTGCTTTGAAGCTTCTAGCTCAAGAGGGCTATGATCCTGAAATGGGAGCTCGCCCATTGCGTCGAATTCTACAAA
CTCGAGTGGAAGACCATTTATCAGAATTACTTTTAGCAGGTGAGCTAAAAACGGGACAAAGCTTGAAAGTCGGTGTCAAG
GCTGGAAAATTGAAGTTTGAAGTGCTCTGA

Domains

Predicted by InterproScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (717-797)

• AAA domain (Cdc48 subfamily) (AAA_2) (539-710)

• ATPase family associated with various cellular activities (AAA) (AAA) (231-349)

• AAA lid domain (AAA_lid_9) (372-446)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (14-60)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (91-133)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Streptococcus pneumoniae TIGR4	76.695	100	0.769
clpC	Streptococcus pneumoniae Rx1	76.695	100	0.769
clpC	Streptococcus pneumoniae D39	76.695	100	0.769
clpC	Streptococcus mutans UA159	66.38	100	0.669
clpC	Streptococcus thermophilus LMG 18311	64.988	100	0.654
clpC	Streptococcus thermophilus LMD-9	64.865	100	0.653
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	49.399	100	0.508
clpC	Bacillus subtilis subsp. subtilis str. 168	45.885	99.135	0.455